Gm39468 Gene Detail

Summary

• Symbol
  Gm39468
• Name
  predicted gene, 39468

• Feature Type
  lncRNA gene
• IDs
  MGI:5622353
  NCBI Gene: 105243583
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:113677000-113678521 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622353	lncRNA gene	Chr11:113676316-113678521 (+)
129S1/SvImJ	ENSMUSG00200034457	lncRNA gene	Chr11:111034034-111035561 (+)
A/J	ENSMUSG00195022055	lncRNA gene	Chr11:110752678-110754222 (+)
AKR/J	ENSMUSG00220035291	lncRNA gene	Chr11:110860139-110861670 (+)
BALB/cJ	ENSMUSG00180018954	lncRNA gene	Chr11:111050541-111052068 (+)
C3H/HeJ	ENSMUSG00175014272	lncRNA gene	Chr11:111004825-111006368 (+)
C57BL/6NJ	ENSMUSG00215020930	lncRNA gene	Chr11:110523525-110525056 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042358	lncRNA gene	Chr11:110428200-110429744 (+)
CBA/J	ENSMUSG00210013861	lncRNA gene	Chr11:110725119-110726662 (+)
DBA/2J	ENSMUSG00185020670	lncRNA gene	Chr11:111036258-111037789 (+)
FVB/NJ	ENSMUSG00205041216	lncRNA gene	Chr11:110878073-110879600 (+)
JF1/MsJ	ENSUMUG00000053674	lncRNA gene	Chr11:111314238-111315759 (+)
LP/J	ENSMUSG00230050838	lncRNA gene	Chr11:112097284-112098811 (+)
NOD/ShiLtJ	ENSMUSG00190023858	lncRNA gene	Chr11:111047730-111049257 (+)
NZO/HlLtJ	ENSMUSG00225053627	lncRNA gene	Chr11:114147711-114149238 (+)
PWK/PhJ	ENSLUMG00010016703	lncRNA gene	Chr11:110846667-110848198 (+)
SPRET/EiJ	ENSMSPG00010037982	lncRNA gene	Chr11:111365535-111367068 (+)
WSB/EiJ	ENSIUOG00005018228	lncRNA gene	Chr11:110806030-110807558 (+)

Homology

• Gene Tree
  Gm39468
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000121049 (Evidence)
• NCBI Gene
  105243583

Representative Sequences			Length	Strain/Species
genomic	105243583	NCBI Gene Model | MGI Sequence Detail	1522	C57BL/6J
transcript	NR_168674	RefSeq | MGI Sequence Detail	829	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm39468:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105767	Chr11:113676985-113677030 (+)	8 bp