Gm39465 Gene Detail

Summary

• Symbol
  Gm39465
• Name
  predicted gene, 39465

• Feature Type
  lncRNA gene
• IDs
  MGI:5622350
  NCBI Gene: 105243580
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:121858575-121880607 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  729 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622350	lncRNA gene	Chr9:121848594-121880607 (-)
129S1/SvImJ	ENSMUSG00200031902	lncRNA gene	Chr9:118973196-119005135 (-)
A/J	ENSMUSG00195029430	lncRNA gene	Chr9:118136169-118168116 (-)
AKR/J	ENSMUSG00220020062	lncRNA gene	Chr9:118590006-118621957 (-)
BALB/cJ	ENSMUSG00180031117	lncRNA gene	Chr9:118674165-118706122 (-)
C3H/HeJ	ENSMUSG00175019665	lncRNA gene	Chr9:118912419-118944370 (-)
C57BL/6NJ	ENSMUSG00215034176	lncRNA gene	Chr9:118803257-118835193 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016910	lncRNA gene	Chr9:118519877-118551906 (-)
CBA/J	ENSMUSG00210043400	lncRNA gene	Chr9:118629719-118661665 (-)
DBA/2J	ENSMUSG00185017197	lncRNA gene	Chr9:118965355-118997310 (-)
FVB/NJ	ENSMUSG00205030899	lncRNA gene	Chr9:118802780-118834731 (-)
JF1/MsJ	ENSUMUG00000048104	lncRNA gene	Chr9:118785281-118816970 (-)
LP/J	ENSMUSG00230038074	lncRNA gene	Chr9:119115567-119147502 (-)
NOD/ShiLtJ	ENSMUSG00190015613	lncRNA gene	Chr9:118570701-118602644 (-)
NZO/HlLtJ	ENSMUSG00225023802	lncRNA gene	Chr9:119375995-119407924 (-)
PWK/PhJ	ENSLUMG00010038859	lncRNA gene	Chr9:118673502-118705446 (-)
SPRET/EiJ	ENSMSPG00010024008	lncRNA gene	Chr9:120387901-120420603 (-)
WSB/EiJ	ENSIUOG00005023448	lncRNA gene	Chr9:117996293-118028273 (-)

Homology

• Gene Tree
  Gm39465
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000111389 (Evidence)
• NCBI Gene
  105243580

Representative Sequences			Length	Strain/Species
genomic	105243580	NCBI Gene Model | MGI Sequence Detail	22033	C57BL/6J
transcript	XR_871391	RefSeq | MGI Sequence Detail	1383	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm39465:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92086	Chr9:121880277-121880284 (-)	326 bp