Gm39463 Gene Detail

Summary

• Symbol
  Gm39463
• Name
  predicted gene, 39463

• Feature Type
  lncRNA gene
• IDs
  MGI:5622348
  NCBI Gene: 105243578
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:121825152-121843993 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  677 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622348	lncRNA gene	Chr9:121825152-121845471 (+)
129S1/SvImJ	ENSMUSG00200031936	lncRNA gene	Chr9:118949761-118968602 (+)
A/J	ENSMUSG00195029486	lncRNA gene	Chr9:118112736-118131574 (+)
AKR/J	ENSMUSG00220020096	lncRNA gene	Chr9:118566589-118585426 (+)
BALB/cJ	ENSMUSG00180031185	lncRNA gene	Chr9:118650734-118669572 (+)
C3H/HeJ	ENSMUSG00175019699	lncRNA gene	Chr9:118888988-118907826 (+)
C57BL/6NJ	ENSMUSG00215034347	lncRNA gene	Chr9:118779815-118798656 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016916	lncRNA gene	Chr9:118496441-118515304 (+)
CBA/J	ENSMUSG00210043518	lncRNA gene	Chr9:118606302-118625139 (+)
DBA/2J	ENSMUSG00185017231	lncRNA gene	Chr9:118941938-118960775 (+)
FVB/NJ	ENSMUSG00205031067	lncRNA gene	Chr9:118779347-118798185 (+)
JF1/MsJ	ENSUMUG00000048215	lncRNA gene	Chr9:118761897-118780743 (+)
LP/J	ENSMUSG00230038132	lncRNA gene	Chr9:119092136-119110973 (+)
NOD/ShiLtJ	ENSMUSG00190015648	lncRNA gene	Chr9:118547266-118566107 (+)
NZO/HlLtJ	ENSMUSG00225023831	lncRNA gene	Chr9:119352556-119371401 (+)
PWK/PhJ	ENSLUMG00010038915	lncRNA gene	Chr9:118650225-118668927 (+)
SPRET/EiJ	ENSMSPG00010024057	lncRNA gene	Chr9:120363080-120382576 (+)
WSB/EiJ	ENSIUOG00005023506	lncRNA gene	Chr9:117972877-117991713 (+)

Homology

• Gene Tree
  Gm39463
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111873 (Evidence)
• NCBI Gene
  105243578

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111873	Ensembl Gene Model | MGI Sequence Detail	18842	C57BL/6J
transcript	ENSMUST00000214575	Ensembl | MGI Sequence Detail	3239	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm39463:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87828	Chr9:121825163-121825181 (+)	20 bp