Gm39458 Gene Detail

Summary

• Symbol
  Gm39458
• Name
  predicted gene, 39458

• Feature Type
  lncRNA gene
• IDs
  MGI:5622343
  NCBI Gene: 105243571
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:120504509-120511531 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  325 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622343	lncRNA gene	Chr9:120503471-120512567 (+)
129S1/SvImJ	ENSMUSG00200032436	lncRNA gene	Chr9:117626164-117634161 (+)
A/J	ENSMUSG00195028231	lncRNA gene	Chr9:116801290-116809304 (+)
AKR/J	ENSMUSG00220019787	lncRNA gene	Chr9:117261935-117269934 (+)
BALB/cJ	ENSMUSG00180030061	lncRNA gene	Chr9:117338523-117346536 (+)
C3H/HeJ	ENSMUSG00175020130	lncRNA gene	Chr9:117581815-117589825 (+)
C57BL/6NJ	ENSMUSG00215033212	lncRNA gene	Chr9:117457450-117465446 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017080	lncRNA gene	Chr9:117199984-117207771 (+)
CBA/J	ENSMUSG00210040885	lncRNA gene	Chr9:117300744-117308743 (+)
DBA/2J	ENSMUSG00185017914	lncRNA gene	Chr9:117634968-117642968 (+)
FVB/NJ	ENSMUSG00205032029	lncRNA gene	Chr9:117470020-117478031 (+)
JF1/MsJ	ENSUMUG00000052001	lncRNA gene	Chr9:117482498-117490288 (+)
LP/J	ENSMUSG00230038091	lncRNA gene	Chr9:117754436-117762431 (+)
NOD/ShiLtJ	ENSMUSG00190015003	lncRNA gene	Chr9:117235838-117243833 (+)
NZO/HlLtJ	ENSMUSG00225023815	lncRNA gene	Chr9:118019008-118027003 (+)
PWK/PhJ	ENSLUMG00010038113	lncRNA gene	Chr9:117370637-117378436 (+)
SPRET/EiJ	ENSMSPG00010026213	lncRNA gene	Chr9:119069514-119077299 (+)
WSB/EiJ	ENSIUOG00005021965	lncRNA gene	Chr9:116677000-116684971 (+)

Homology

• Gene Tree
  Gm39458
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000111533 (Evidence)
• NCBI Gene
  105243571

Representative Sequences			Length	Strain/Species
genomic	105243571	NCBI Gene Model | MGI Sequence Detail	7023	C57BL/6J
transcript	AK044014	GenBank | ENA | DDBJ | MGI Sequence Detail	737	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14