Gm39397 Gene Detail

Summary

• Symbol
  Gm39397
• Name
  predicted gene, 39397
• Synonyms
  Gm45840

• Feature Type
  lncRNA gene
• IDs
  MGI:5622282
  NCBI Gene: 105243492
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:103303593-103312868 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  355 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622282	lncRNA gene	Chr11:103303592-103345549 (+)
129S1/SvImJ	ENSMUSG00200053371	lncRNA gene	Chr11:100589651-100599066 (+)
A/J	ENSMUSG00195053370	lncRNA gene	Chr11:100289067-100299135 (+)
AKR/J	ENSMUSG00220052413	lncRNA gene	Chr11:100497868-100507217 (+)
BALB/cJ	ENSMUSG00180053038	lncRNA gene	Chr11:100636362-100645445 (+)
C3H/HeJ	ENSMUSG00175052958	lncRNA gene	Chr11:100563235-100572652 (+)
C57BL/6NJ	ENSMUSG00215054247	lncRNA gene	Chr11:100126312-100135586 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050842	lncRNA gene	Chr11:100057988-100067143 (+)
CBA/J	ENSMUSG00210053622	lncRNA gene	Chr11:100264851-100274918 (+)
DBA/2J	ENSMUSG00185053727	lncRNA gene	Chr11:100613028-100622439 (+)
FVB/NJ	ENSMUSG00205050591	lncRNA gene	Chr11:100447929-100459832 (+)
JF1/MsJ	ENSUMUG00000056504	lncRNA gene	Chr11:100866933-100876133 (+)
LP/J	ENSMUSG00230035753	lncRNA gene	Chr11:101665419-101674836 (+)
NOD/ShiLtJ	ENSMUSG00190052306	lncRNA gene	Chr11:100644550-100653632 (+)
NZO/HlLtJ	ENSMUSG00225053011	lncRNA gene	Chr11:103680882-103690100 (+)
PWK/PhJ	ENSLUMG00010052101	lncRNA gene	Chr11:100399554-100408753 (+)
SPRET/EiJ	ENSMSPG00010051331	lncRNA gene	Chr11:100893787-100903405 (+)
WSB/EiJ	ENSIUOG00005051838	lncRNA gene	Chr11:100406921-100416178 (+)

Homology

• Gene Tree
  Gm39397
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2

• Ensembl
  ENSMUSG00000110636 (Evidence)
• NCBI Gene
  105243492

Representative Sequences			Length	Strain/Species
genomic	105243492	NCBI Gene Model | MGI Sequence Detail	9276	C57BL/6J
transcript	XR_004937084	RefSeq | MGI Sequence Detail	873	C57BL/6J

Other
Accession IDs

MGI:5804955

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm39397:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105343	Chr11:103303654-103303666 (+)	67 bp