Gm39392 Gene Detail

Summary

• Symbol
  Gm39392
• Name
  predicted gene, 39392

• Feature Type
  lncRNA gene
• IDs
  MGI:5622277
  NCBI Gene: 105243483
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:101677915-101679978 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622277	lncRNA gene	Chr11:101674640-101679978 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm39392
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  3

• Ensembl
  ENSMUSG00000122429 (Evidence)
• NCBI Gene
  105243483

Representative Sequences			Length	Strain/Species
genomic	105243483	NCBI Gene Model | MGI Sequence Detail	2064	C57BL/6J
transcript	XR_880221	RefSeq | MGI Sequence Detail	1514	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39392:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105162	Chr11:101678554-101678564 (+)	644 bp
Tssr105163	Chr11:101678590-101678602 (+)	681 bp