Gm39384 Gene Detail

Summary

• Symbol
  Gm39384
• Name
  predicted gene, 39384

• Feature Type
  lncRNA gene
• IDs
  MGI:5622269
  NCBI Gene: 105243470
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:83453613-83455204 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622269	lncRNA gene	Chr9:83453607-83455342 (-)
129S1/SvImJ	ENSMUSG00200019391	lncRNA gene	Chr9:80539814-80541543 (-)
A/J	ENSMUSG00195011657	lncRNA gene	Chr9:80355044-80356773 (-)
AKR/J	ENSMUSG00220015090	lncRNA gene	Chr9:80458440-80460169 (-)
BALB/cJ	ENSMUSG00180019435	lncRNA gene	Chr9:80462616-80464345 (-)
C3H/HeJ	ENSMUSG00175011763	lncRNA gene	Chr9:80522563-80524292 (-)
C57BL/6NJ	ENSMUSG00215016706	lncRNA gene	Chr9:80458622-80460351 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009399	lncRNA gene	Chr9:80056152-80057881 (-)
CBA/J	ENSMUSG00210013456	lncRNA gene	Chr9:80565065-80566794 (-)
DBA/2J	ENSMUSG00185007810	lncRNA gene	Chr9:80576685-80578414 (-)
FVB/NJ	ENSMUSG00205028598	lncRNA gene	Chr9:80761017-80762746 (-)
JF1/MsJ	ENSUMUG00000040930	lncRNA gene	Chr9:80466131-80467860 (-)
LP/J	ENSMUSG00230025037	lncRNA gene	Chr9:80678123-80679852 (-)
NOD/ShiLtJ	ENSMUSG00190037076	lncRNA gene	Chr9:80651769-80653498 (-)
NZO/HlLtJ	ENSMUSG00225025961	lncRNA gene	Chr9:80878183-80879912 (-)
PWK/PhJ	ENSLUMG00010016683	lncRNA gene	Chr9:80389371-80391100 (-)
SPRET/EiJ	ENSMSPG00010002784	lncRNA gene	Chr9:81742757-81744477 (-)
WSB/EiJ	ENSIUOG00005027582	lncRNA gene	Chr9:80040676-80042405 (-)

Homology

• Gene Tree
  Gm39384
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm39384
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000110950 (Evidence)
• NCBI Gene
  105243470

Representative Sequences			Length	Strain/Species
genomic	105243470	NCBI Gene Model | MGI Sequence Detail	1592	C57BL/6J
transcript	XR_870963	RefSeq | MGI Sequence Detail	605	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;