Gm39377 Gene Detail

Summary

• Symbol
  Gm39377
• Name
  predicted gene, 39377

• Feature Type
  lncRNA gene
• IDs
  MGI:5622262
  NCBI Gene: 105243461
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:79285401-79298137 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  579 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622262	lncRNA gene	Chr9:79285401-79298137 (-)
129S1/SvImJ	ENSMUSG00200019640	lncRNA gene	Chr9:76396292-76415606 (-)
A/J	ENSMUSG00195011188	lncRNA gene	Chr9:76207031-76237826 (-)
AKR/J	ENSMUSG00220015321	lncRNA gene	Chr9:76313319-76335783 (-)
BALB/cJ	ENSMUSG00180018876	lncRNA gene	Chr9:76320513-76346513 (-)
C3H/HeJ	ENSMUSG00175012330	lncRNA gene	Chr9:76379290-76406856 (-)
C57BL/6NJ	ENSMUSG00215017050	lncRNA gene	Chr9:76281133-76293871 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010104	lncRNA gene	Chr9:75958869-75977813 (-)
CBA/J	ENSMUSG00210013315	lncRNA gene	Chr9:76412216-76438207 (-)
DBA/2J	ENSMUSG00185008486	lncRNA gene	Chr9:76440612-76466625 (-)
FVB/NJ	ENSMUSG00205034415	lncRNA gene	Chr9:76597355-76621002 (-)
JF1/MsJ	ENSUMUG00000042849	lncRNA gene	Chr9:76322905-76341861 (-)
LP/J	ENSMUSG00230025734	lncRNA gene	Chr9:76547824-76567132 (-)
NOD/ShiLtJ	ENSMUSG00190037415	lncRNA gene	Chr9:76516630-76542639 (-)
NZO/HlLtJ	ENSMUSG00225025581	lncRNA gene	Chr9:76738481-76764488 (-)
PWK/PhJ	ENSLUMG00010016343	lncRNA gene	Chr9:76284163-76296866 (-)
SPRET/EiJ	ENSMSPG00010004343	lncRNA gene	Chr9:77558974-77571796 (-)
WSB/EiJ	ENSIUOG00005026745	lncRNA gene	Chr9:75875293-75888047 (-)

Homology

• Gene Tree
  Gm39377
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm39377
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000111633 (Evidence)
• NCBI Gene
  105243461

Representative Sequences			Length	Strain/Species
genomic	105243461	NCBI Gene Model | MGI Sequence Detail	12737	C57BL/6J
transcript	AK132232	GenBank | ENA | DDBJ | MGI Sequence Detail	1772	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;