Gm39348 Gene Detail

Summary

• Symbol
  Gm39348
• Name
  predicted gene, 39348

• Feature Type
  lncRNA gene
• IDs
  MGI:5622233
  NCBI Gene: 105243422
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:60958681-60963159 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  237 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622233	lncRNA gene	Chr9:60956291-60963159 (-)
129S1/SvImJ	ENSMUSG00200035938	lncRNA gene	Chr9:58067524-58074349 (-)
A/J	ENSMUSG00195040844	lncRNA gene	Chr9:57776779-57783591 (-)
AKR/J	ENSMUSG00220033789	lncRNA gene	Chr9:57926029-57932868 (-)
BALB/cJ	ENSMUSG00180018881	lncRNA gene	Chr9:57904209-57911018 (-)
C3H/HeJ	ENSMUSG00175022870	lncRNA gene	Chr9:57908573-57915378 (-)
C57BL/6NJ	ENSMUSG00215033705	lncRNA gene	Chr9:57891382-57898196 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021825	lncRNA gene	Chr9:57819461-57826336 (-)
CBA/J	ENSMUSG00210041506	lncRNA gene	Chr9:58005388-58012187 (-)
DBA/2J	ENSMUSG00185043867	lncRNA gene	Chr9:58030483-58037294 (-)
FVB/NJ	ENSMUSG00205042923	lncRNA gene	Chr9:58345920-58352725 (-)
JF1/MsJ	ENSUMUG00000051397	lncRNA gene	Chr9:58061699-58068503 (-)
LP/J	ENSMUSG00230039841	lncRNA gene	Chr9:58267041-58273855 (-)
NOD/ShiLtJ	ENSMUSG00190044360	lncRNA gene	Chr9:58100103-58106916 (-)
NZO/HlLtJ	ENSMUSG00225028489	lncRNA gene	Chr9:58325262-58332066 (-)
PWK/PhJ	ENSLUMG00010040169	lncRNA gene	Chr9:58019965-58026801 (-)
SPRET/EiJ	ENSMSPG00010029448	lncRNA gene	Chr9:59099363-59106179 (-)
WSB/EiJ	ENSIUOG00005040870	lncRNA gene	Chr9:57506148-57512943 (-)

Homology

• Gene Tree
  Gm39348
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000111180 (Evidence)
• NCBI Gene
  105243422

Representative Sequences			Length	Strain/Species
genomic	105243422	NCBI Gene Model | MGI Sequence Detail	4479	C57BL/6J
transcript	AK041708	GenBank | ENA | DDBJ | MGI Sequence Detail	1846	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;