Gm39329 Gene Detail

Summary

• Symbol
  Gm39329
• Name
  predicted gene, 39329

• Feature Type
  lncRNA gene
• IDs
  MGI:5622214
  NCBI Gene: 105243395
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:46230304-46243104 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  380 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622214	lncRNA gene	Chr9:46214882-46243104 (+)
129S1/SvImJ	ENSMUSG00200018522	lncRNA gene	Chr9:43316622-43329363 (+)
A/J	ENSMUSG00195024868	lncRNA gene	Chr9:43076673-43089441 (+)
AKR/J	ENSMUSG00220041135	lncRNA gene	Chr9:43156368-43169130 (+)
BALB/cJ	ENSMUSG00180033948	lncRNA gene	Chr9:43188364-43201140 (+)
C3H/HeJ	ENSMUSG00175016679	lncRNA gene	Chr9:43200480-43213251 (+)
C57BL/6NJ	ENSMUSG00215036988	lncRNA gene	Chr9:43150214-43162977 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016507	lncRNA gene	Chr9:43144122-43156716 (+)
CBA/J	ENSMUSG00210017037	lncRNA gene	Chr9:43239988-43252767 (+)
DBA/2J	ENSMUSG00185012614	lncRNA gene	Chr9:43314916-43327682 (+)
FVB/NJ	ENSMUSG00205042518	lncRNA gene	Chr9:43554702-43567470 (+)
JF1/MsJ	ENSUMUG00000042941	lncRNA gene	Chr9:43358414-43371168 (+)
LP/J	ENSMUSG00230042235	lncRNA gene	Chr9:43606861-43619596 (+)
NOD/ShiLtJ	ENSMUSG00190027395	lncRNA gene	Chr9:43393533-43406301 (+)
NZO/HlLtJ	ENSMUSG00225045025	lncRNA gene	Chr9:43566569-43579304 (+)
PWK/PhJ	ENSLUMG00010021353	lncRNA gene	Chr9:43321990-43334394 (+)
SPRET/EiJ	ENSMSPG00010011174	lncRNA gene	Chr9:44073558-44086505 (+)
WSB/EiJ	ENSIUOG00005023002	lncRNA gene	Chr9:42804779-42817524 (+)

Homology

• Gene Tree
  Gm39329
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3

• Ensembl
  ENSMUSG00000111126 (Evidence)
• NCBI Gene
  105243395

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111126	Ensembl Gene Model | MGI Sequence Detail	12801	C57BL/6J
transcript	ENSMUST00000271467	Ensembl | MGI Sequence Detail	1578	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9