Gm39325 Gene Detail

Summary

• Symbol
  Gm39325
• Name
  predicted gene, 39325

• Feature Type
  lncRNA gene
• IDs
  MGI:5622210
  NCBI Gene: 105243390
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:43977921-43984077 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622210	lncRNA gene	Chr9:43977622-43996114 (-)
129S1/SvImJ	ENSMUSG00200019088	lncRNA gene	Chr9:41066736-41071437 (-)
A/J	ENSMUSG00195025115	lncRNA gene	Chr9:40811050-40815732 (-)
AKR/J	ENSMUSG00220042488	lncRNA gene	Chr9:40908416-40913135 (-)
BALB/cJ	ENSMUSG00180031495	lncRNA gene	Chr9:40922747-40927428 (-)
C3H/HeJ	ENSMUSG00175015855	lncRNA gene	Chr9:40934458-40939137 (-)
C57BL/6NJ	ENSMUSG00215036091	lncRNA gene	Chr9:40898267-40902971 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016137	lncRNA gene	Chr9:40896982-40901678 (-)
CBA/J	ENSMUSG00210016718	lncRNA gene	Chr9:40981891-40986578 (-)
DBA/2J	ENSMUSG00185011899	lncRNA gene	Chr9:41049408-41054087 (-)
FVB/NJ	ENSMUSG00205042442	lncRNA gene	Chr9:41308032-41312750 (-)
JF1/MsJ	ENSUMUG00000041042	lncRNA gene	Chr9:41106318-41111037 (-)
LP/J	ENSMUSG00230041978	lncRNA gene	Chr9:41357237-41361939 (-)
NOD/ShiLtJ	ENSMUSG00190025243	lncRNA gene	Chr9:41128392-41133072 (-)
NZO/HlLtJ	ENSMUSG00225044263	lncRNA gene	Chr9:41311955-41316630 (-)
PWK/PhJ	ENSLUMG00010022835	lncRNA gene	Chr9:41061592-41066303 (-)
SPRET/EiJ	ENSMSPG00010011754	lncRNA gene	Chr9:41830475-41835134 (-)
WSB/EiJ	ENSIUOG00005022415	lncRNA gene	Chr9:40545233-40549919 (-)

Homology

• Gene Tree
  Gm39325
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000111415 (Evidence)
• NCBI Gene
  105243390

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111415	Ensembl Gene Model | MGI Sequence Detail	6157	C57BL/6J
transcript	ENSMUST00000216448	Ensembl | MGI Sequence Detail	2374	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;