Gm39318 Gene Detail

Summary

• Symbol
  Gm39318
• Name
  predicted gene, 39318

• Feature Type
  lncRNA gene
• IDs
  MGI:5622203
  NCBI Gene: 105243376
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:35101383-35105114 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  229 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622203	lncRNA gene	Chr9:35099959-35105114 (+)
129S1/SvImJ	ENSMUSG00200040379	lncRNA gene	Chr9:32081192-32086296 (+)
A/J	ENSMUSG00195049851	lncRNA gene	Chr9:31872620-31877724 (+)
AKR/J	ENSMUSG00220048100	lncRNA gene	Chr9:31911991-31917094 (+)
BALB/cJ	ENSMUSG00180046339	lncRNA gene	Chr9:32000945-32006049 (+)
C3H/HeJ	ENSMUSG00175048851	lncRNA gene	Chr9:32002167-32007271 (+)
C57BL/6NJ	ENSMUSG00215032991	lncRNA gene	Chr9:31999597-32004751 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045804	lncRNA gene	Chr9:31973898-31979056 (+)
CBA/J	ENSMUSG00210047016	lncRNA gene	Chr9:32013662-32018765 (+)
DBA/2J	ENSMUSG00185037612	lncRNA gene	Chr9:32052002-32057105 (+)
FVB/NJ	ENSMUSG00205041158	lncRNA gene	Chr9:32367689-32372793 (+)
JF1/MsJ	ENSUMUG00000045029	lncRNA gene	Chr9:32244221-32249390 (+)
LP/J	ENSMUSG00230034869	lncRNA gene	Chr9:32479074-32484243 (+)
NOD/ShiLtJ	ENSMUSG00190037360	lncRNA gene	Chr9:32129496-32134599 (+)
NZO/HlLtJ	ENSMUSG00225022242	lncRNA gene	Chr9:32447092-32452261 (+)
PWK/PhJ	ENSLUMG00010046012	lncRNA gene	Chr9:32125992-32131169 (+)
SPRET/EiJ	ENSMSPG00010038552	lncRNA gene	Chr9:32552310-32557399 (+)
WSB/EiJ	ENSIUOG00005043978	lncRNA gene	Chr9:31574275-31579422 (+)

Homology

• Gene Tree
  Gm39318
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000110774 (Evidence)
• NCBI Gene
  105243376

Representative Sequences			Length	Strain/Species
genomic	105243376	NCBI Gene Model | MGI Sequence Detail	3732	C57BL/6J
transcript	MK071705	GenBank | ENA | DDBJ | MGI Sequence Detail	1217	Not Specified

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14