Gm39317 Gene Detail

Summary

• Symbol
  Gm39317
• Name
  predicted gene, 39317

• Feature Type
  lncRNA gene
• IDs
  MGI:5622202
  NCBI Gene: 105243373
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:32258769-32273040 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  528 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622202	lncRNA gene	Chr9:32251450-32278694 (+)
129S1/SvImJ	ENSMUSG00200008562	lncRNA gene	Chr9:29260241-29273910 (+)
A/J	ENSMUSG00195006524	lncRNA gene	Chr9:29072331-29086011 (+)
AKR/J	ENSMUSG00220010655	lncRNA gene	Chr9:29102123-29115799 (+)
BALB/cJ	ENSMUSG00180007182	lncRNA gene	Chr9:29200752-29214417 (+)
C3H/HeJ	ENSMUSG00175020042	lncRNA gene	Chr9:29186540-29200209 (+)
C57BL/6NJ	ENSMUSG00215008629	lncRNA gene	Chr9:29157206-29170904 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019283	lncRNA gene	Chr9:29158428-29169017 (+)
CBA/J	ENSMUSG00210022162	lncRNA gene	Chr9:29206318-29219996 (+)
DBA/2J	ENSMUSG00185002525	lncRNA gene	Chr9:29258959-29270781 (+)
FVB/NJ	ENSMUSG00205004606	lncRNA gene	Chr9:29559995-29573676 (+)
JF1/MsJ	ENSUMUG00000016195	lncRNA gene	Chr9:29448307-29459403 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190006638	lncRNA gene	Chr9:29292858-29306531 (+)
NZO/HlLtJ	ENSMUSG00225014914	lncRNA gene	Chr9:29669460-29683140 (+)
PWK/PhJ	ENSLUMG00010009903	lncRNA gene	Chr9:29303738-29314588 (+)
SPRET/EiJ	ENSMSPG00010002227	lncRNA gene	Chr9:29680558-29691568 (+)
WSB/EiJ	ENSIUOG00005015961	lncRNA gene	Chr9:28735866-28749645 (+)

Homology

• Gene Tree
  Gm39317
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000111056 (Evidence)
• NCBI Gene
  105243373

Representative Sequences			Length	Strain/Species
genomic	105243373	NCBI Gene Model | MGI Sequence Detail	14272	C57BL/6J
transcript	XR_870611	RefSeq | MGI Sequence Detail	1845	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;