Gm39307 Gene Detail

Summary

• Symbol
  Gm39307
• Name
  predicted gene, 39307

• Feature Type
  lncRNA gene
• IDs
  MGI:5622192
  NCBI Gene: 105243360
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:22171398-22174585 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  280 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622192	lncRNA gene	Chr9:22171398-22174585 (+)
129S1/SvImJ	ENSMUSG00200050022	lncRNA gene	Chr9:19126461-19129648 (+)
A/J	ENSMUSG00195039880	lncRNA gene	Chr9:18963144-18966331 (+)
AKR/J	ENSMUSG00220036117	lncRNA gene	Chr9:18965553-18968742 (+)
BALB/cJ	ENSMUSG00180043324	lncRNA gene	Chr9:19097413-19100602 (+)
C3H/HeJ	ENSMUSG00175045312	lncRNA gene	Chr9:19059929-19063115 (+)
C57BL/6NJ	ENSMUSG00215038819	lncRNA gene	Chr9:19057235-19060422 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035000	lncRNA gene	Chr9:19109229-19112440 (+)
CBA/J	ENSMUSG00210045285	lncRNA gene	Chr9:19040850-19044035 (+)
DBA/2J	ENSMUSG00185027543	lncRNA gene	Chr9:19156157-19159343 (+)
FVB/NJ	ENSMUSG00205045687	lncRNA gene	Chr9:19402474-19405581 (+)
JF1/MsJ	ENSUMUG00000050114	lncRNA gene	Chr9:19279199-19282403 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190044902	lncRNA gene	Chr9:19095360-19098467 (+)
NZO/HlLtJ	ENSMUSG00225051372	lncRNA gene	Chr9:19498088-19501275 (+)
PWK/PhJ	ENSLUMG00010048283	lncRNA gene	Chr9:19156354-19159558 (+)
SPRET/EiJ	ENSMSPG00010025446	lncRNA gene	Chr9:19385547-19388641 (+)
WSB/EiJ	ENSIUOG00005047503	lncRNA gene	Chr9:18625641-18628816 (+)

Homology

• Gene Tree
  Gm39307
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000111205 (Evidence)
• NCBI Gene
  105243360

Representative Sequences			Length	Strain/Species
genomic	105243360	NCBI Gene Model | MGI Sequence Detail	3188	C57BL/6J
transcript	NR_166680	RefSeq | MGI Sequence Detail	1037	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;