Gm39302 Gene Detail

Summary

• Symbol
  Gm39302
• Name
  predicted gene, 39302

• Feature Type
  lncRNA gene
• IDs
  MGI:5622187
  NCBI Gene: 105243355
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:21229366-21232410 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  231 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622187	lncRNA gene	Chr9:21228586-21232410 (-)
129S1/SvImJ	ENSMUSG00200050453	lncRNA gene	Chr9:18183629-18186177 (-)
A/J	ENSMUSG00195040676	lncRNA gene	Chr9:18020192-18022736 (-)
AKR/J	ENSMUSG00220036622	lncRNA gene	Chr9:18022628-18025176 (-)
BALB/cJ	ENSMUSG00180043812	lncRNA gene	Chr9:18154448-18156995 (-)
C3H/HeJ	ENSMUSG00175045210	lncRNA gene	Chr9:18117060-18119610 (-)
C57BL/6NJ	ENSMUSG00215037956	lncRNA gene	Chr9:18114310-18116858 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035565	lncRNA gene	Chr9:18155313-18157824 (-)
CBA/J	ENSMUSG00210045714	lncRNA gene	Chr9:18097980-18100527 (-)
DBA/2J	ENSMUSG00185027451	lncRNA gene	Chr9:18213285-18215832 (-)
FVB/NJ	ENSMUSG00205045771	lncRNA gene	Chr9:18444648-18447170 (-)
JF1/MsJ	ENSUMUG00000051381	lncRNA gene	Chr9:18322881-18325380 (-)
LP/J	ENSMUSG00230044914	lncRNA gene	Chr9:18602632-18605153 (-)
NOD/ShiLtJ	ENSMUSG00190043586	lncRNA gene	Chr9:18136420-18138941 (-)
NZO/HlLtJ	ENSMUSG00225051384	lncRNA gene	Chr9:18555324-18557871 (-)
PWK/PhJ	ENSLUMG00010047573	lncRNA gene	Chr9:18212908-18215407 (-)
SPRET/EiJ	ENSMSPG00010026353	lncRNA gene	Chr9:18441443-18443947 (-)
WSB/EiJ	ENSIUOG00005045937	lncRNA gene	Chr9:17681466-17684023 (-)

Homology

• Gene Tree
  Gm39302
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  14
• Gene trapped
  14
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000111172 (Evidence)
• NCBI Gene
  105243355

Representative Sequences			Length	Strain/Species
genomic	105243355	NCBI Gene Model | MGI Sequence Detail	3045	C57BL/6J
transcript	NR_166671	RefSeq | MGI Sequence Detail	940	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Gm39302:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88395	Chr9:21232966-21232973 (-)	-560 bp
Tssr88394	Chr9:21231902-21231932 (-)	493 bp