Gm39283 Gene Detail

Summary

• Symbol
  Gm39283
• Name
  predicted gene, 39283

• Feature Type
  lncRNA gene
• IDs
  MGI:5622168
  NCBI Gene: 105243330
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:126412297-126422603 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  410 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622168	lncRNA gene	Chr8:126407782-126423141 (+)
129S1/SvImJ	ENSMUSG00200043325	lncRNA gene	Chr8:120666448-120677248 (+)
A/J	ENSMUSG00195027003	lncRNA gene	Chr8:120941577-120952381 (+)
AKR/J	ENSMUSG00220001768	lncRNA gene	Chr8:121128948-121140281 (+)
BALB/cJ	ENSMUSG00180000934	lncRNA gene	Chr8:120986379-120997188 (+)
C3H/HeJ	ENSMUSG00175005187	lncRNA gene	Chr8:121057825-121068632 (+)
C57BL/6NJ	ENSMUSG00215000731	lncRNA gene	Chr8:120645197-120656002 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036031	lncRNA gene	Chr8:120381682-120392558 (+)
CBA/J	ENSMUSG00210014107	lncRNA gene	Chr8:120976765-120987573 (+)
DBA/2J	ENSMUSG00185039071	lncRNA gene	Chr8:127295757-127306573 (+)
FVB/NJ	ENSMUSG00205041190	lncRNA gene	Chr8:119944415-119955215 (+)
JF1/MsJ	ENSUMUG00000039597	lncRNA gene	Chr8:129486990-129497766 (+)
LP/J	ENSMUSG00230007640	lncRNA gene	Chr8:130849031-130859824 (+)
NOD/ShiLtJ	ENSMUSG00190006859	lncRNA gene	Chr8:121093081-121104036 (+)
NZO/HlLtJ	ENSMUSG00225020251	lncRNA gene	Chr8:134208491-134219296 (+)
PWK/PhJ	ENSLUMG00010040000	lncRNA gene	Chr8:120772541-120782858 (+)
SPRET/EiJ	ENSMSPG00010001816	lncRNA gene	Chr8:122955072-122966635 (+)
WSB/EiJ	ENSIUOG00005003137	lncRNA gene	Chr8:121754634-121765482 (+)

Homology

• Gene Tree
  Gm39283
  

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000120908 (Evidence)
• NCBI Gene
  105243330

Representative Sequences			Length	Strain/Species
genomic	105243330	NCBI Gene Model | MGI Sequence Detail	10307	C57BL/6J
transcript	NR_168709	RefSeq | MGI Sequence Detail	2258	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm39283:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80078	Chr8:126412350-126412374 (+)	65 bp