Gm39244 Gene Detail

Summary

• Symbol
  Gm39244
• Name
  predicted gene, 39244
• Synonyms
  Gm45529

• Feature Type
  lncRNA gene
• IDs
  MGI:5622129
  NCBI Gene: 105243280
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:109254262-109264482 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  305 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622129	lncRNA gene	Chr8:109253569-109264490 (-)
129S1/SvImJ	ENSMUSG00200015186	lncRNA gene	Chr8:103545141-103556047 (-)
A/J	ENSMUSG00195021291	lncRNA gene	Chr8:103858258-103869153 (-)
AKR/J	ENSMUSG00220015652	lncRNA gene	Chr8:104000578-104011476 (-)
BALB/cJ	ENSMUSG00180027175	lncRNA gene	Chr8:103863907-103874814 (-)
C3H/HeJ	ENSMUSG00175025786	lncRNA gene	Chr8:103920753-103931647 (-)
C57BL/6NJ	ENSMUSG00215037531	lncRNA gene	Chr8:103533623-103544553 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035242	lncRNA gene	Chr8:103275568-103286600 (-)
CBA/J	ENSMUSG00210037005	lncRNA gene	Chr8:103848041-103858928 (-)
DBA/2J	ENSMUSG00185005881	lncRNA gene	Chr8:109956918-109967812 (-)
FVB/NJ	ENSMUSG00205024394	lncRNA gene	Chr8:102832697-102843603 (-)
JF1/MsJ	ENSUMUG00000022006	lncRNA gene	Chr8:112290063-112300961 (-)
LP/J	ENSMUSG00230036699	lncRNA gene	Chr8:113637028-113647934 (-)
NOD/ShiLtJ	ENSMUSG00190029037	lncRNA gene	Chr8:103992726-104003620 (-)
NZO/HlLtJ	ENSMUSG00225023403	lncRNA gene	Chr8:116987676-116998574 (-)
PWK/PhJ	ENSLUMG00010029483	lncRNA gene	Chr8:103748765-103759728 (-)
SPRET/EiJ	ENSMSPG00010042638	lncRNA gene	Chr8:105836102-105847980 (-)
WSB/EiJ	ENSIUOG00005033419	lncRNA gene	Chr8:104656769-104667722 (-)

Homology

• Gene Tree
  Gm39244
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3

• Ensembl
  ENSMUSG00000109868 (Evidence)
• NCBI Gene
  105243280

Representative Sequences			Length	Strain/Species
genomic	105243280	NCBI Gene Model | MGI Sequence Detail	10221	C57BL/6J
transcript	NR_166530	RefSeq | MGI Sequence Detail	2899	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5791365

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm39244:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82811	Chr8:109264476-109264493 (-)	-3 bp