Gm39231 Gene Detail

Summary

• Symbol
  Gm39231
• Name
  predicted gene, 39231
• Synonyms
  Gm45362

• Feature Type
  lncRNA gene
• IDs
  MGI:5622116
  NCBI Gene: 105243262
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:98566753-98573836 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  400 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622116	lncRNA gene	Chr8:98562588-98573899 (+)
129S1/SvImJ	ENSMUSG00200015117	lncRNA gene	Chr8:92963710-92970941 (+)
A/J	ENSMUSG00195004062	lncRNA gene	Chr8:93272235-93279465 (+)
AKR/J	ENSMUSG00220012109	lncRNA gene	Chr8:93317863-93325093 (+)
BALB/cJ	ENSMUSG00180004142	lncRNA gene	Chr8:93190749-93197980 (+)
C3H/HeJ	ENSMUSG00175002859	lncRNA gene	Chr8:93259823-93267054 (+)
C57BL/6NJ	ENSMUSG00215001260	lncRNA gene	Chr8:92839468-92846687 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023485	lncRNA gene	Chr8:92641292-92648506 (+)
CBA/J	ENSMUSG00210015431	lncRNA gene	Chr8:93191761-93198992 (+)
DBA/2J	ENSMUSG00185024775	lncRNA gene	Chr8:99300719-99307950 (+)
FVB/NJ	ENSMUSG00205017489	lncRNA gene	Chr8:92266842-92274073 (+)
JF1/MsJ	ENSUMUG00000015997	lncRNA gene	Chr8:101643633-101650864 (+)
LP/J	ENSMUSG00230008751	lncRNA gene	Chr8:102914100-102921319 (+)
NOD/ShiLtJ	ENSMUSG00190013163	lncRNA gene	Chr8:93307211-93314442 (+)
NZO/HlLtJ	ENSMUSG00225011920	lncRNA gene	Chr8:106341021-106348252 (+)
PWK/PhJ	ENSLUMG00010004304	lncRNA gene	Chr8:93051828-93059055 (+)
SPRET/EiJ	ENSMSPG00010006642	lncRNA gene	Chr8:95182194-95189502 (+)
WSB/EiJ	ENSIUOG00005006043	lncRNA gene	Chr8:93974983-93982202 (+)

Homology

• Gene Tree
  Gm39231
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000109615 (Evidence)
• NCBI Gene
  105243262

Representative Sequences			Length	Strain/Species
genomic	105243262	NCBI Gene Model | MGI Sequence Detail	7084	C57BL/6J
transcript	XR_879128	RefSeq | MGI Sequence Detail	365	C57BL/6J

Other
Accession IDs

MGI:5791198

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;