Gm39228 Gene Detail

Summary

• Symbol
  Gm39228
• Name
  predicted gene, 39228
• Synonyms
  Gm45806

• Feature Type
  lncRNA gene
• IDs
  MGI:5622113
  NCBI Gene: 118567560
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:94909917-94911610 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622113	lncRNA gene	Chr8:94909917-94915027 (+)
129S1/SvImJ	ENSMUSG00200017363	lncRNA gene	Chr8:89270109-89271789 (+)
A/J	ENSMUSG00195028537	lncRNA gene	Chr8:89632700-89634380 (+)
AKR/J	ENSMUSG00220042007	lncRNA gene	Chr8:89659756-89661436 (+)
BALB/cJ	ENSMUSG00180026344	lncRNA gene	Chr8:89516559-89518239 (+)
C3H/HeJ	ENSMUSG00175028076	lncRNA gene	Chr8:89575897-89577577 (+)
C57BL/6NJ	ENSMUSG00215029256	lncRNA gene	Chr8:89181196-89182876 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017900	lncRNA gene	Chr8:89019928-89021767 (+)
CBA/J	ENSMUSG00210039407	lncRNA gene	Chr8:89510365-89512045 (+)
DBA/2J	ENSMUSG00185023913	lncRNA gene	Chr8:95619201-95620881 (+)
FVB/NJ	ENSMUSG00205017115	lncRNA gene	Chr8:88603953-88605633 (+)
JF1/MsJ	ENSUMUG00000045578	lncRNA gene	Chr8:97970843-97972523 (+)
LP/J	ENSMUSG00230031694	lncRNA gene	Chr8:99263849-99265529 (+)
NOD/ShiLtJ	ENSMUSG00190016496	lncRNA gene	Chr8:89637383-89639063 (+)
NZO/HlLtJ	ENSMUSG00225011624	lncRNA gene	Chr8:102659831-102661511 (+)
PWK/PhJ	ENSLUMG00010041278	lncRNA gene	Chr8:89322505-89324167 (+)
SPRET/EiJ	ENSMSPG00010006470	lncRNA gene	Chr8:91363070-91364950 (+)
WSB/EiJ	ENSIUOG00005020084	lncRNA gene	Chr8:90334443-90336123 (+)

Homology

• Gene Tree
  Gm39228
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  12
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000110524 (Evidence)
• NCBI Gene
  118567560

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110524	Ensembl Gene Model | MGI Sequence Detail	1694	C57BL/6J
transcript	ENSMUST00000295047	Ensembl | MGI Sequence Detail	510	Not Applicable

Other
Accession IDs

MGI:5804921

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139