Gm39214 Gene Detail

Summary

• Symbol
  Gm39214
• Name
  predicted gene, 39214
• Synonyms
  Gm45423

• Feature Type
  lncRNA gene
• IDs
  MGI:5622099
  NCBI Gene: 105243241
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:86453028-86493085 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  910 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622099	lncRNA gene	Chr8:86427602-86493085 (+)
129S1/SvImJ	ENSMUSG00200017612	lncRNA gene	Chr8:80812451-80847872 (+)
A/J	ENSMUSG00195029879	lncRNA gene	Chr8:81180562-81215973 (+)
AKR/J	ENSMUSG00220042395	lncRNA gene	Chr8:81211435-81246862 (+)
BALB/cJ	ENSMUSG00180026895	lncRNA gene	Chr8:81015868-81051285 (+)
C3H/HeJ	ENSMUSG00175028158	lncRNA gene	Chr8:81116223-81151632 (+)
C57BL/6NJ	ENSMUSG00215030281	lncRNA gene	Chr8:80724287-80758726 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038938	lncRNA gene	Chr8:80611858-80646429 (+)
CBA/J	ENSMUSG00210040735	lncRNA gene	Chr8:81103329-81138724 (+)
DBA/2J	ENSMUSG00185039786	lncRNA gene	Chr8:87211916-87247320 (+)
FVB/NJ	ENSMUSG00205041390	lncRNA gene	Chr8:80159183-80194587 (+)
JF1/MsJ	ENSUMUG00000040561	lncRNA gene	Chr8:89531673-89566213 (+)
LP/J	ENSMUSG00230031861	lncRNA gene	Chr8:90809372-90844787 (+)
NOD/ShiLtJ	ENSMUSG00190016875	lncRNA gene	Chr8:81179339-81213783 (+)
NZO/HlLtJ	ENSMUSG00225040531	lncRNA gene	Chr8:94215215-94249653 (+)
PWK/PhJ	ENSLUMG00010032114	lncRNA gene	Chr8:80865438-80899927 (+)
SPRET/EiJ	ENSMSPG00010034072	lncRNA gene	Chr8:82776984-82811482 (+)
WSB/EiJ	ENSIUOG00005021080	lncRNA gene	Chr8:81898807-81934214 (+)

Homology

• Gene Tree
  Gm39214
  

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000109754 (Evidence)
• NCBI Gene
  105243241

Representative Sequences			Length	Strain/Species
genomic	105243241	NCBI Gene Model | MGI Sequence Detail	40058	C57BL/6J
transcript	AK085761	GenBank | ENA | DDBJ | MGI Sequence Detail	1544	C57BL/6J

Molecular
Reagents

• All nucleic 5

  cDNA 5

Other
Accession IDs

MGI:5791259

References

• Summaries
  All 7
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm39214:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78563	Chr8:86457439-86457457 (+)	4,420 bp