Gm39204 Gene Detail

Summary

• Symbol
  Gm39204
• Name
  predicted gene, 39204
• Synonyms
  Gm45325

• Feature Type
  lncRNA gene
• IDs
  MGI:5622089
  NCBI Gene: 105243226
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:79733650-79740651 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  344 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622089	lncRNA gene	Chr8:79680555-79740748 (+)
129S1/SvImJ	ENSMUSG00200025410	lncRNA gene	Chr8:74039193-74099393 (+)
A/J	ENSMUSG00195019320	lncRNA gene	Chr8:74390247-74450459 (+)
AKR/J	ENSMUSG00220023423	lncRNA gene	Chr8:74482036-74542244 (+)
BALB/cJ	ENSMUSG00180020769	lncRNA gene	Chr8:74241337-74301555 (+)
C3H/HeJ	ENSMUSG00175011608	lncRNA gene	Chr8:74320609-74380826 (+)
C57BL/6NJ	ENSMUSG00215027459	lncRNA gene	Chr8:73957014-74017269 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036753	lncRNA gene	Chr8:73888033-73948281 (+)
CBA/J	ENSMUSG00210020420	lncRNA gene	Chr8:74266471-74326675 (+)
DBA/2J	ENSMUSG00185013611	lncRNA gene	Chr8:80421796-80482008 (+)
FVB/NJ	ENSMUSG00205042207	lncRNA gene	Chr8:73412390-73472646 (+)
JF1/MsJ	ENSUMUG00000036995	lncRNA gene	Chr8:82765084-82824111 (+)
LP/J	ENSMUSG00230029672	lncRNA gene	Chr8:84040167-84100372 (+)
NOD/ShiLtJ	ENSMUSG00190029800	lncRNA gene	Chr8:74325446-74392773 (+)
NZO/HlLtJ	ENSMUSG00225023290	lncRNA gene	Chr8:87412334-87479667 (+)
PWK/PhJ	ENSLUMG00010030976	lncRNA gene	Chr8:74180281-74240405 (+)
SPRET/EiJ	ENSMSPG00010024013	lncRNA gene	Chr8:75906405-75967080 (+)
WSB/EiJ	ENSIUOG00005015987	lncRNA gene	Chr8:75090046-75150292 (+)

Homology

• Gene Tree
  Gm39204
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm39204
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000109583 (Evidence)
• NCBI Gene
  105243226

Representative Sequences			Length	Strain/Species
genomic	105243226	NCBI Gene Model | MGI Sequence Detail	7002	C57BL/6J
transcript	XR_878953	RefSeq | MGI Sequence Detail	761	C57BL/6J

Other
Accession IDs

MGI:5791161

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;