Gm39193 Gene Detail

Summary

• Symbol
  Gm39193
• Name
  predicted gene, 39193

• Feature Type
  lncRNA gene
• IDs
  MGI:5622078
  NCBI Gene: 105243212
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:71857992-71858538 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622078	lncRNA gene	Chr8:71857992-71858607 (-)
129S1/SvImJ	ENSMUSG00200033042	lncRNA gene	Chr8:66454813-66455364 (-)
A/J	ENSMUSG00195019108	lncRNA gene	Chr8:66903164-66903715 (-)
AKR/J	ENSMUSG00220025202	lncRNA gene	Chr8:66941350-66941901 (-)
BALB/cJ	ENSMUSG00180029120	lncRNA gene	Chr8:66637571-66638122 (-)
C3H/HeJ	ENSMUSG00175022255	lncRNA gene	Chr8:66840025-66840576 (-)
C57BL/6NJ	ENSMUSG00215038113	lncRNA gene	Chr8:66415498-66416049 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039654	lncRNA gene	Chr8:66440106-66440657 (-)
CBA/J	ENSMUSG00210034659	lncRNA gene	Chr8:66683632-66684183 (-)
DBA/2J	ENSMUSG00185013208	lncRNA gene	Chr8:72843268-72843819 (-)
FVB/NJ	ENSMUSG00205043491	lncRNA gene	Chr8:65935594-65936145 (-)
JF1/MsJ	ENSUMUG00000043457	lncRNA gene	Chr8:75106506-75107057 (-)
LP/J	ENSMUSG00230035064	lncRNA gene	Chr8:76454740-76455291 (-)
NOD/ShiLtJ	ENSMUSG00190034202	lncRNA gene	Chr8:66598701-66599252 (-)
NZO/HlLtJ	ENSMUSG00225048388	lncRNA gene	Chr8:79854885-79855436 (-)
PWK/PhJ	ENSLUMG00010035139	lncRNA gene	Chr8:66571168-66571719 (-)
SPRET/EiJ	ENSMSPG00010042431	lncRNA gene	Chr8:68262799-68263351 (-)
WSB/EiJ	ENSIUOG00005026696	lncRNA gene	Chr8:67452382-67452933 (-)

Homology

• Gene Tree
  Gm39193
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm39193
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000121023 (Evidence)
• NCBI Gene
  105243212

Representative Sequences			Length	Strain/Species
genomic	105243212	NCBI Gene Model | MGI Sequence Detail	547	C57BL/6J
transcript	NR_176656	RefSeq | MGI Sequence Detail	391	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39193:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81707	Chr8:71858534-71858548 (-)	-3 bp