Gm39185 Gene Detail

Summary

• Symbol
  Gm39185
• Name
  predicted gene, 39185
• Synonyms
  Gm45825

• Feature Type
  lncRNA gene
• IDs
  MGI:5622070
  NCBI Gene: 105243198
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:67358660-67391460 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  951 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622070	lncRNA gene	Chr8:67358649-67428240 (+)
129S1/SvImJ	ENSMUSG00200032490	lncRNA gene	Chr8:62200434-62232259 (+)
A/J	ENSMUSG00195017564	lncRNA gene	Chr8:62606791-62637261 (+)
AKR/J	ENSMUSG00220025397	lncRNA gene	Chr8:62412974-62443428 (+)
BALB/cJ	ENSMUSG00180028958	lncRNA gene	Chr8:62176827-62208665 (+)
C3H/HeJ	ENSMUSG00175022121	lncRNA gene	Chr8:62412792-62443245 (+)
C57BL/6NJ	ENSMUSG00215037529	lncRNA gene	Chr8:62183871-62215704 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040550	lncRNA gene	Chr8:61981029-62011726 (+)
CBA/J	ENSMUSG00210034517	lncRNA gene	Chr8:62291685-62322138 (+)
DBA/2J	ENSMUSG00185022811	lncRNA gene	Chr8:68344797-68375250 (+)
FVB/NJ	ENSMUSG00205042524	lncRNA gene	Chr8:61753928-61784381 (+)
JF1/MsJ	ENSUMUG00000040212	lncRNA gene	Chr8:70623583-70654298 (+)
LP/J	ENSMUSG00230035575	lncRNA gene	Chr8:71993870-72025705 (+)
NOD/ShiLtJ	ENSMUSG00190031164	lncRNA gene	Chr8:62217871-62248341 (+)
NZO/HlLtJ	ENSMUSG00225049085	lncRNA gene	Chr8:75420619-75451077 (+)
PWK/PhJ	ENSLUMG00010035584	lncRNA gene	Chr8:62080702-62111505 (+)
SPRET/EiJ	ENSMSPG00010041424	lncRNA gene	Chr8:63398999-63430440 (+)
WSB/EiJ	ENSIUOG00005027109	lncRNA gene	Chr8:63061468-63091913 (+)

Homology

• Gene Tree
  Gm39185
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm39185
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000110468 (Evidence)
• NCBI Gene
  105243198

Representative Sequences			Length	Strain/Species
genomic	105243198	NCBI Gene Model | MGI Sequence Detail	32801	C57BL/6J
transcript	XR_870476	RefSeq | MGI Sequence Detail	626	C57BL/6J

Other
Accession IDs

MGI:5804940

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;