Gm39167 Gene Detail

Summary

• Symbol
  Gm39167
• Name
  predicted gene, 39167

• Feature Type
  lncRNA gene
• IDs
  MGI:5622052
  NCBI Gene: 105243175
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:41607089-41626021 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  530 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622052	lncRNA gene	Chr8:41606453-41626021 (+)
129S1/SvImJ	ENSMUSG00200007753	lncRNA gene	Chr8:36674560-36677157 (+)
A/J	ENSMUSG00195006121	lncRNA gene	Chr8:37166746-37169327 (+)
AKR/J	ENSMUSG00220006414	lncRNA gene	Chr8:36971641-36974234 (+)
BALB/cJ	ENSMUSG00180003309	lncRNA gene	Chr8:36711505-36714088 (+)
C3H/HeJ	ENSMUSG00175015111	lncRNA gene	Chr8:36889466-36892049 (+)
C57BL/6NJ	ENSMUSG00215009506	lncRNA gene	Chr8:36679523-36682080 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005840	lncRNA gene	Chr8:36797593-36800150 (+)
CBA/J	ENSMUSG00210012804	lncRNA gene	Chr8:36729664-36732243 (+)
DBA/2J	ENSMUSG00185006060	lncRNA gene	Chr8:42630190-42632775 (+)
FVB/NJ	ENSMUSG00205002414	lncRNA gene	Chr8:35884862-35887446 (+)
JF1/MsJ	ENSUMUG00000015872	lncRNA gene	Chr8:44340425-44342982 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190015929	lncRNA gene	Chr8:36750451-36753034 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013249	lncRNA gene	Chr8:36576180-36578931 (+)
SPRET/EiJ	ENSMSPG00010004550	lncRNA gene	Chr8:37426488-37429053 (+)
WSB/EiJ	ENSIUOG00005005673	lncRNA gene	Chr8:37613558-37616111 (+)

Homology

• Gene Tree
  Gm39167
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  4

• Ensembl
  ENSMUSG00000120793 (Evidence)
• NCBI Gene
  105243175

Representative Sequences			Length	Strain/Species
genomic	105243175	NCBI Gene Model | MGI Sequence Detail	18933	C57BL/6J
transcript	XR_870396	RefSeq | MGI Sequence Detail	1280	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm39167:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77087	Chr8:41607126-41607143 (+)	46 bp