Gm39164 Gene Detail

Summary

• Symbol
  Gm39164
• Name
  predicted gene, 39164
• Synonyms
  Gm45569

• Feature Type
  lncRNA gene
• IDs
  MGI:5622049
  NCBI Gene: 105243172
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:36641284-36643201 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  218 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622049	lncRNA gene	Chr8:36630345-36643295 (-)
129S1/SvImJ	ENSMUSG00200007675	lncRNA gene	Chr8:31764155-31766065 (-)
A/J	ENSMUSG00195005926	lncRNA gene	Chr8:32244789-32246700 (-)
AKR/J	ENSMUSG00220006327	lncRNA gene	Chr8:32007419-32009329 (-)
BALB/cJ	ENSMUSG00180003187	lncRNA gene	Chr8:31788120-31790031 (-)
C3H/HeJ	ENSMUSG00175014742	lncRNA gene	Chr8:31950568-31952478 (-)
C57BL/6NJ	ENSMUSG00215008501	lncRNA gene	Chr8:31710595-31712502 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005680	lncRNA gene	Chr8:31911466-31913352 (-)
CBA/J	ENSMUSG00210012779	lncRNA gene	Chr8:31773567-31775477 (-)
DBA/2J	ENSMUSG00185002396	lncRNA gene	Chr8:37699821-37701732 (-)
FVB/NJ	ENSMUSG00205002370	lncRNA gene	Chr8:30986170-30988080 (-)
JF1/MsJ	ENSUMUG00000009417	lncRNA gene	Chr8:39386899-39388807 (-)
LP/J	ENSMUSG00230009775	lncRNA gene	Chr8:41349879-41351789 (-)
NOD/ShiLtJ	ENSMUSG00190015637	lncRNA gene	Chr8:31821421-31823331 (-)
NZO/HlLtJ	ENSMUSG00225015046	lncRNA gene	Chr8:44941997-44943904 (-)
PWK/PhJ	ENSLUMG00010012814	lncRNA gene	Chr8:31609055-31610963 (-)
SPRET/EiJ	ENSMSPG00010004503	lncRNA gene	Chr8:32351839-32353739 (-)
WSB/EiJ	ENSIUOG00005005954	lncRNA gene	Chr8:32593910-32595819 (-)

Homology

• Gene Tree
  Gm39164
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000110321 (Evidence)
• NCBI Gene
  105243172

Representative Sequences			Length	Strain/Species
genomic	105243172	NCBI Gene Model | MGI Sequence Detail	1918	C57BL/6J
transcript	NR_166578	RefSeq | MGI Sequence Detail	223	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5791405

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm39164:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80946	Chr8:36643195-36643205 (-)	1 bp
Tssr80945	Chr8:36643185-36643193 (-)	12 bp