Gm39154 Gene Detail

Summary

• Symbol
  Gm39154
• Name
  predicted gene, 39154
• Synonyms
  Gm45491

• Feature Type
  lncRNA gene
• IDs
  MGI:5622039
  NCBI Gene: 105243156
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:30601993-30633416 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1070 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622039	lncRNA gene	Chr8:30569557-30633744 (-)
129S1/SvImJ	ENSMUSG00200022394	lncRNA gene	Chr8:25649961-25658992 (-)
A/J	ENSMUSG00195005828	lncRNA gene	Chr8:26191801-26200834 (-)
AKR/J	ENSMUSG00220026577	lncRNA gene	Chr8:25913203-25922232 (-)
BALB/cJ	ENSMUSG00180005767	lncRNA gene	Chr8:25705918-25714951 (-)
C3H/HeJ	ENSMUSG00175007107	lncRNA gene	Chr8:25870254-25879285 (-)
C57BL/6NJ	ENSMUSG00215013753	lncRNA gene	Chr8:25668815-25677719 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023643	lncRNA gene	Chr8:25839272-25848197 (-)
CBA/J	ENSMUSG00210014076	lncRNA gene	Chr8:25717472-25726505 (-)
DBA/2J	ENSMUSG00185002225	lncRNA gene	Chr8:31601361-31610392 (-)
FVB/NJ	ENSMUSG00205004408	lncRNA gene	Chr8:24901273-24910291 (-)
JF1/MsJ	ENSUMUG00000008008	lncRNA gene	Chr8:33312074-33320979 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190004701	lncRNA gene	Chr8:25729804-25738823 (-)
NZO/HlLtJ	ENSMUSG00225021950	lncRNA gene	Chr8:38882103-38891009 (-)
PWK/PhJ	ENSLUMG00010027234	lncRNA gene	Chr8:25620276-25629185 (-)
SPRET/EiJ	ENSMSPG00010016480	lncRNA gene	Chr8:26242219-26251676 (-)
WSB/EiJ	ENSIUOG00005011339	lncRNA gene	Chr8:26387119-26396144 (-)

Homology

• Gene Tree
  Gm39154
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000109666 (Evidence)
• NCBI Gene
  105243156

Representative Sequences			Length	Strain/Species
genomic	105243156	NCBI Gene Model | MGI Sequence Detail	31424	C57BL/6J
transcript	XR_870298	RefSeq | MGI Sequence Detail	807	C57BL/6J

Other
Accession IDs

MGI:5791327

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;