Gm39150 Gene Detail

Summary

• Symbol
  Gm39150
• Name
  predicted gene, 39150

• Feature Type
  lncRNA gene
• IDs
  MGI:5622035
  NCBI Gene: 105243151
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:27454902-27465943 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  332 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622035	lncRNA gene	Chr8:27448236-27469186 (-)
129S1/SvImJ	ENSMUSG00200022306	lncRNA gene	Chr8:22547830-22556139 (-)
A/J	ENSMUSG00195005835	lncRNA gene	Chr8:23056348-23064669 (-)
AKR/J	ENSMUSG00220025876	lncRNA gene	Chr8:22694032-22702351 (-)
BALB/cJ	ENSMUSG00180005542	lncRNA gene	Chr8:22580945-22589276 (-)
C3H/HeJ	ENSMUSG00175006892	lncRNA gene	Chr8:22656612-22664926 (-)
C57BL/6NJ	ENSMUSG00215011811	lncRNA gene	Chr8:22545220-22553532 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024997	lncRNA gene	Chr8:22849711-22858022 (-)
CBA/J	ENSMUSG00210014262	lncRNA gene	Chr8:22580023-22588340 (-)
DBA/2J	ENSMUSG00185040964	lncRNA gene	Chr8:28396186-28404502 (-)
FVB/NJ	ENSMUSG00205004487	lncRNA gene	Chr8:22085614-22093927 (-)
JF1/MsJ	ENSUMUG00000008301	lncRNA gene	Chr8:30248207-30256558 (-)
LP/J	ENSMUSG00230016349	lncRNA gene	Chr8:32140211-32148522 (-)
NOD/ShiLtJ	ENSMUSG00190004605	lncRNA gene	Chr8:22623415-22631726 (-)
NZO/HlLtJ	ENSMUSG00225022393	lncRNA gene	Chr8:35772973-35781287 (-)
PWK/PhJ	ENSLUMG00010026003	lncRNA gene	Chr8:22633062-22641353 (-)
SPRET/EiJ	ENSMSPG00010016635	lncRNA gene	Chr8:22922945-22931366 (-)
WSB/EiJ	ENSIUOG00005010993	lncRNA gene	Chr8:23304548-23312864 (-)

Homology

• Gene Tree
  Gm39150
  

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  2

• Ensembl
  ENSMUSG00000120055 (Evidence)
• NCBI Gene
  105243151

Representative Sequences			Length	Strain/Species
genomic	105243151	NCBI Gene Model | MGI Sequence Detail	11042	C57BL/6J
transcript	XR_004934945	RefSeq | MGI Sequence Detail	4120	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm39150:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80759	Chr8:27466976-27467014 (-)	-1,052 bp