Gm39147 Pseudogene Detail

Summary

• Symbol
  Gm39147
• Name
  predicted gene, 39147
• Synonyms
  Gm45239

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5622032
  NCBI Gene: 105243147
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:25916868-25917332 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622032	pseudogene	Chr8:25889092-25917397 (+)
129S1/SvImJ	ENSMUSG00200022143	pseudogene	Chr8:20930050-20958466 (+)
A/J	ENSMUSG00195006000	pseudogene	Chr8:21471902-21500323 (+)
AKR/J	ENSMUSG00220026754	pseudogene	Chr8:21095484-21123898 (+)
BALB/cJ	ENSMUSG00180005491	pseudogene	Chr8:20996483-21024905 (+)
C3H/HeJ	ENSMUSG00175006808	pseudogene	Chr8:21059275-21087680 (+)
C57BL/6NJ	ENSMUSG00215013224	pseudogene	Chr8:20974077-21002499 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024196	pseudogene	Chr8:21273518-21302942 (+)
CBA/J	ENSMUSG00210014578	pseudogene	Chr8:20995791-21024212 (+)
DBA/2J	ENSMUSG00185040334	pseudogene	Chr8:26796499-26824905 (+)
FVB/NJ	ENSMUSG00205004127	pseudogene	Chr8:20494610-20523031 (+)
JF1/MsJ	ENSUMUG00000027522	pseudogene	Chr8:28668346-28697576 (+)
LP/J	ENSMUSG00230016395	pseudogene	Chr8:30556009-30584429 (+)
NOD/ShiLtJ	ENSMUSG00190004484	pseudogene	Chr8:21029264-21057680 (+)
NZO/HlLtJ	ENSMUSG00225022457	pseudogene	Chr8:34177372-34205787 (+)
PWK/PhJ	ENSLUMG00010026306	pseudogene	Chr8:21043534-21072800 (+)
SPRET/EiJ	ENSMSPG00010016764	pseudogene	Chr8:21323482-21353127 (+)
WSB/EiJ	ENSIUOG00005011052	pseudogene	Chr8:21741984-21770355 (+)

Homology

• Gene Tree
  Gm39147
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000110172 (Evidence)
• NCBI Gene
  105243147

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110172	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000211376	Ensembl | MGI Sequence Detail	465	Not Applicable
polypeptide	XP_030099758	RefSeq | MGI Sequence Detail	155	C57BL/6J

Other
Accession IDs

MGI:5791075

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm39147:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76678	Chr8:25916684-25916687 (+)	-182 bp