Gm39129 Gene Detail

Summary

• Symbol
  Gm39129
• Name
  predicted gene, 39129
• Synonyms
  Gm45046

• Feature Type
  lncRNA gene
• IDs
  MGI:5622014
  NCBI Gene: 105243118
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:10788758-10820844 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622014	lncRNA gene	Chr8:10788758-10821094 (+)
129S1/SvImJ	ENSMUSG00200013326	lncRNA gene	Chr8:7670752-7702715 (+)
A/J	ENSMUSG00195011088	lncRNA gene	Chr8:8030159-8062125 (+)
AKR/J	ENSMUSG00220011495	lncRNA gene	Chr8:7759419-7791378 (+)
BALB/cJ	ENSMUSG00180005039	lncRNA gene	Chr8:7669239-7701200 (+)
C3H/HeJ	ENSMUSG00175008501	lncRNA gene	Chr8:7822161-7854124 (+)
C57BL/6NJ	ENSMUSG00215010768	lncRNA gene	Chr8:7703593-7735552 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021250	lncRNA gene	Chr8:7652341-7684042 (+)
CBA/J	ENSMUSG00210011391	lncRNA gene	Chr8:7663190-7695153 (+)
DBA/2J	ENSMUSG00185004516	lncRNA gene	Chr8:7795938-7827898 (+)
FVB/NJ	ENSMUSG00205005792	lncRNA gene	Chr8:7683142-7715107 (+)
JF1/MsJ	ENSUMUG00000044703	lncRNA gene	Chr8:7798733-7830212 (+)
LP/J	ENSMUSG00230008468	lncRNA gene	Chr8:9973686-10005649 (+)
NOD/ShiLtJ	ENSMUSG00190011975	lncRNA gene	Chr8:7780983-7812946 (+)
NZO/HlLtJ	ENSMUSG00225019084	lncRNA gene	Chr8:17830820-17862782 (+)
PWK/PhJ	ENSLUMG00010011072	lncRNA gene	Chr8:7723225-7754671 (+)
SPRET/EiJ	ENSMSPG00010018680	lncRNA gene	Chr8:7856932-7888401 (+)
WSB/EiJ	ENSIUOG00005005439	lncRNA gene	Chr8:7679900-7711869 (+)

Homology

• Gene Tree
  Gm39129
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4

• Ensembl
  ENSMUSG00000109271 (Evidence)
• NCBI Gene
  105243118

Representative Sequences			Length	Strain/Species
genomic	105243118	NCBI Gene Model | MGI Sequence Detail	32087	C57BL/6J
transcript	XR_870134	RefSeq | MGI Sequence Detail	3296	C57BL/6J

Other
Accession IDs

MGI:5753622

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;