Gm39128 Gene Detail

Summary

• Symbol
  Gm39128
• Name
  predicted gene, 39128
• Synonyms
  Gm44517

• Feature Type
  lncRNA gene
• IDs
  MGI:5622013
  NCBI Gene: 105243117
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:9217556-9224786 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  337 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622013	lncRNA gene	Chr8:9217517-9224793 (+)
129S1/SvImJ	ENSMUSG00200012879	lncRNA gene	Chr8:6089901-6097566 (+)
A/J	ENSMUSG00195010858	lncRNA gene	Chr8:6454259-6461535 (+)
AKR/J	ENSMUSG00220011465	lncRNA gene	Chr8:6179860-6187136 (+)
BALB/cJ	ENSMUSG00180004835	lncRNA gene	Chr8:6093407-6100683 (+)
C3H/HeJ	ENSMUSG00175008288	lncRNA gene	Chr8:6234088-6241364 (+)
C57BL/6NJ	ENSMUSG00215009408	lncRNA gene	Chr8:6127780-6135056 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021043	lncRNA gene	Chr8:6106141-6113454 (+)
CBA/J	ENSMUSG00210011266	lncRNA gene	Chr8:6087398-6094678 (+)
DBA/2J	ENSMUSG00185004467	lncRNA gene	Chr8:6222164-6229440 (+)
FVB/NJ	ENSMUSG00205005706	lncRNA gene	Chr8:6147730-6155008 (+)
JF1/MsJ	ENSUMUG00000046361	lncRNA gene	Chr8:6236948-6244337 (+)
LP/J	ENSMUSG00230008299	lncRNA gene	Chr8:8397939-8405605 (+)
NOD/ShiLtJ	ENSMUSG00190012307	lncRNA gene	Chr8:6205257-6212539 (+)
NZO/HlLtJ	ENSMUSG00225018158	lncRNA gene	Chr8:16255019-16262685 (+)
PWK/PhJ	ENSLUMG00010011200	lncRNA gene	Chr8:6149256-6156642 (+)
SPRET/EiJ	ENSMSPG00010019026	lncRNA gene	Chr8:6229788-6237102 (+)
WSB/EiJ	ENSIUOG00005005619	lncRNA gene	Chr8:6118030-6125689 (+)

Homology

• Gene Tree
  Gm39128
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000109064 (Evidence)
• NCBI Gene
  105243117

Representative Sequences			Length	Strain/Species
genomic	105243117	NCBI Gene Model | MGI Sequence Detail	7231	C57BL/6J
transcript	XR_870129	RefSeq | MGI Sequence Detail	1048	C57BL/6J

Other
Accession IDs

MGI:5753093

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;