Gm39121 Gene Detail

Summary

• Symbol
  Gm39121
• Name
  predicted gene, 39121
• Synonyms
  Gm45230

• Feature Type
  lncRNA gene
• IDs
  MGI:5622006
  NCBI Gene: 105243109
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:3722069-3722962 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622006	lncRNA gene	Chr8:3722069-3722962 (+)
129S1/SvImJ	ENSMUSG00200012347	lncRNA gene	Chr8:543456-543981 (+)
A/J	ENSMUSG00195011375	lncRNA gene	Chr8:947696-948220 (+)
AKR/J	ENSMUSG00220011286	lncRNA gene	Chr8:674230-674754 (+)
BALB/cJ	ENSMUSG00180004772	lncRNA gene	Chr8:598181-598705 (+)
C3H/HeJ	ENSMUSG00175008416	lncRNA gene	Chr8:712786-713310 (+)
C57BL/6NJ	ENSMUSG00215009739	lncRNA gene	Chr8:627140-627664 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020432	lncRNA gene	Chr8:685004-685528 (+)
CBA/J	ENSMUSG00210011028	lncRNA gene	Chr8:590355-590879 (+)
DBA/2J	ENSMUSG00185004154	lncRNA gene	Chr8:726402-726926 (+)
FVB/NJ	ENSMUSG00205005778	lncRNA gene	Chr8:660220-660744 (+)
JF1/MsJ	ENSUMUG00000043757	lncRNA gene	Chr8:680112-680637 (+)
LP/J	ENSMUSG00230008209	lncRNA gene	Chr8:2895996-2896520 (+)
NOD/ShiLtJ	ENSMUSG00190012053	lncRNA gene	Chr8:700416-700940 (+)
NZO/HlLtJ	ENSMUSG00225020007	lncRNA gene	Chr8:10761243-10761767 (+)
PWK/PhJ	ENSLUMG00010011599	lncRNA gene	Chr8:637368-637893 (+)
SPRET/EiJ	ENSMSPG00010016938	lncRNA gene	Chr8:610552-611077 (+)
WSB/EiJ	ENSIUOG00005005075	lncRNA gene	Chr8:634881-635405 (+)

Homology

• Gene Tree
  Gm39121
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000109277 (Evidence)
• NCBI Gene
  105243109

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109277	Ensembl Gene Model | MGI Sequence Detail	894	C57BL/6J
transcript	ENSMUST00000317966	Ensembl | MGI Sequence Detail	727	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5753806

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14