Gm39114 Gene Detail

Summary

• Symbol
  Gm39114
• Name
  predicted gene, 39114

• Feature Type
  lncRNA gene
• IDs
  MGI:5621999
  NCBI Gene: 105243088
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:140638362-140640812 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621999	lncRNA gene	Chr7:140634171-140640812 (-)
129S1/SvImJ	ENSMUSG00200047439	lncRNA gene	Chr7:127203500-127205939 (-)
A/J	ENSMUSG00195040488	lncRNA gene	Chr7:131685932-131688371 (-)
AKR/J	ENSMUSG00220035346	lncRNA gene	Chr7:125167729-125170167 (-)
BALB/cJ	ENSMUSG00180041418	lncRNA gene	Chr7:128378122-128380561 (-)
C3H/HeJ	ENSMUSG00175046059	lncRNA gene	Chr7:129106406-129108845 (-)
C57BL/6NJ	ENSMUSG00215047343	lncRNA gene	Chr7:128372971-128375410 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050943	lncRNA gene	Chr7:131680699-131683185 (-)
CBA/J	ENSMUSG00210031560	lncRNA gene	Chr7:128864441-128866880 (-)
DBA/2J	ENSMUSG00185017631	lncRNA gene	Chr7:133142961-133145400 (-)
FVB/NJ	ENSMUSG00205047096	lncRNA gene	Chr7:128785244-128787683 (-)
JF1/MsJ	ENSUMUG00000050881	lncRNA gene	Chr7:138222105-138224540 (-)
LP/J	ENSMUSG00230043036	lncRNA gene	Chr7:139306434-139308873 (-)
NOD/ShiLtJ	ENSMUSG00190030734	lncRNA gene	Chr7:128971856-128974295 (-)
NZO/HlLtJ	ENSMUSG00225052243	lncRNA gene	Chr7:137515667-137518106 (-)
PWK/PhJ	ENSLUMG00010047456	lncRNA gene	Chr7:127353633-127356061 (-)
SPRET/EiJ	ENSMSPG00010044441	lncRNA gene	Chr7:128791496-128793908 (-)
WSB/EiJ	ENSIUOG00005038900	lncRNA gene	Chr7:129705163-129707583 (-)

Homology

• Gene Tree
  Gm39114
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000120649 (Evidence)
• NCBI Gene
  105243088

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120649	Ensembl Gene Model | MGI Sequence Detail	2451	C57BL/6J
transcript	ENSMUST00000366041	Ensembl | MGI Sequence Detail	984	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39114:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75573	Chr7:140640756-140640780 (-)	44 bp