Gm39094 Gene Detail

Summary

• Symbol
  Gm39094
• Name
  predicted gene, 39094
• Synonyms
  Gm44868

• Feature Type
  lncRNA gene
• IDs
  MGI:5621979
  NCBI Gene: 105243063
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:129259821-129264786 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  298 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621979	lncRNA gene	Chr7:129257547-129333473 (+)
129S1/SvImJ	ENSMUSG00200027736	lncRNA gene	Chr7:115794541-115869974 (+)
A/J	ENSMUSG00195047295	lncRNA gene	Chr7:120277658-120350391 (+)
AKR/J	ENSMUSG00220016793	lncRNA gene	Chr7:113732044-113804769 (+)
BALB/cJ	ENSMUSG00180013898	lncRNA gene	Chr7:116972844-117045564 (+)
C3H/HeJ	ENSMUSG00175019574	lncRNA gene	Chr7:117699505-117772227 (+)
C57BL/6NJ	ENSMUSG00215038813	lncRNA gene	Chr7:116973383-117046108 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006633	lincRNA gene	Chr7:131674587-131744717 (+)
CAST/EiJ	ENSTCUG00005050167	lncRNA gene	Chr7:120225788-120298173 (+)
CBA/J	ENSMUSG00210023652	lncRNA gene	Chr7:117454293-117527019 (+)
DBA/2J	ENSMUSG00185025141	lncRNA gene	Chr7:121767192-121839919 (+)
FVB/NJ	ENSMUSG00205043731	lncRNA gene	Chr7:117407903-117480619 (+)
JF1/MsJ	ENSUMUG00000050698	lncRNA gene	Chr7:126802904-126878364 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020320	lncRNA gene	Chr7:117595806-117668521 (+)
NZO/HlLtJ	ENSMUSG00225012850	lncRNA gene	Chr7:126112714-126185424 (+)
PWK/PhJ	ENSLUMG00010044833	lncRNA gene	Chr7:115978466-116053811 (+)
SPRET/EiJ	ENSMSPG00010014353	lncRNA gene	Chr7:117257783-117335953 (+)
WSB/EiJ	ENSIUOG00005034903	lncRNA gene	Chr7:118313827-118400741 (+)

Homology

• Gene Tree
  Gm39094
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000108580 (Evidence)
• NCBI Gene
  105243063

Representative Sequences			Length	Strain/Species
genomic	105243063	NCBI Gene Model | MGI Sequence Detail	4966	C57BL/6J
transcript	XR_869976	RefSeq | MGI Sequence Detail	1666	C57BL/6J

Other
Accession IDs

MGI:5753444

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm39094:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69461	Chr7:129264642-129264645 (+)	4,823 bp