Gm39091 Gene Detail

Summary

• Symbol
  Gm39091
• Name
  predicted gene, 39091
• Synonyms
  Gm45108

• Feature Type
  lncRNA gene
• IDs
  MGI:5621976
  NCBI Gene: 105243059
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:127781551-127783268 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621976	lncRNA gene	Chr7:127779129-127783268 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004512	antisense lncRNA gene	Chr7:132585618-132587335 (-)
A/J	MGP_AJ_G0004492	antisense lncRNA gene	Chr7:129023408-129025125 (-)
AKR/J	MGP_AKRJ_G0004475	antisense lncRNA gene	Chr7:132401662-132403379 (-)
BALB/cJ	MGP_BALBcJ_G0004477	antisense lncRNA gene	Chr7:128689070-128690787 (-)
C3H/HeJ	MGP_C3HHeJ_G0004426	antisense lncRNA gene	Chr7:132283712-132285429 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004627	antisense lncRNA gene	Chr7:137758221-137759938 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004081	antisense lncRNA gene	Chr7:130210366-130211995 (-)
CAST/EiJ	MGP_CASTEiJ_G0004386	antisense lncRNA gene	Chr7:124075257-124077028 (-)
CBA/J	MGP_CBAJ_G0004421	antisense lncRNA gene	Chr7:142454550-142456265 (-)
DBA/2J	MGP_DBA2J_G0004435	antisense lncRNA gene	Chr7:127012292-127014009 (-)
FVB/NJ	MGP_FVBNJ_G0004452	antisense lncRNA gene	Chr7:126875720-126877430 (-)
LP/J	MGP_LPJ_G0004516	antisense lncRNA gene	Chr7:134067427-134069144 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004441	antisense lncRNA gene	Chr7:143496726-143498436 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004626	antisense lncRNA gene	Chr7:131361756-131363473 (-)
PWK/PhJ	MGP_PWKPhJ_G0004339	antisense lncRNA gene	Chr7:120016389-120018110 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004280	antisense lncRNA gene	Chr7:118169252-118170960 (-)
WSB/EiJ	MGP_WSBEiJ_G0004425	antisense lncRNA gene	Chr7:132337903-132339616 (-)

Homology

• Gene Tree
  Gm39091
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000108531 (Evidence)
• NCBI Gene
  105243059

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108531	Ensembl Gene Model | MGI Sequence Detail	1718	C57BL/6J
transcript	ENSMUST00000206189	Ensembl | MGI Sequence Detail	553	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5753684

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;