Gm39078 Gene Detail

Summary

• Symbol
  Gm39078
• Name
  predicted gene, 39078
• Synonyms
  Gm45111

• Feature Type
  lncRNA gene
• IDs
  MGI:5621963
  NCBI Gene: 105243042
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:119202472-119204896 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621963	lncRNA gene	Chr7:119200063-119204896 (-)
129S1/SvImJ	ENSMUSG00200022805	lncRNA gene	Chr7:105717766-105721706 (-)
A/J	ENSMUSG00195039869	lncRNA gene	Chr7:110236933-110240873 (-)
AKR/J	ENSMUSG00220027541	lncRNA gene	Chr7:103678524-103682464 (-)
BALB/cJ	ENSMUSG00180034694	lncRNA gene	Chr7:106900122-106904063 (-)
C3H/HeJ	ENSMUSG00175027273	lncRNA gene	Chr7:107613688-107617628 (-)
C57BL/6NJ	ENSMUSG00215040947	lncRNA gene	Chr7:106872929-106876870 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044381	lncRNA gene	Chr7:110182792-110186729 (-)
CBA/J	ENSMUSG00210024976	lncRNA gene	Chr7:107336214-107340154 (-)
DBA/2J	ENSMUSG00185051328	lncRNA gene	Chr7:111687203-111691143 (-)
FVB/NJ	ENSMUSG00205050163	lncRNA gene	Chr7:107335168-107339108 (-)
JF1/MsJ	ENSUMUG00000051371	lncRNA gene	Chr7:116750140-116754076 (-)
LP/J	ENSMUSG00230038315	lncRNA gene	Chr7:117804690-117808631 (-)
NOD/ShiLtJ	ENSMUSG00190027898	lncRNA gene	Chr7:107549111-107553051 (-)
NZO/HlLtJ	ENSMUSG00225040558	lncRNA gene	Chr7:116043731-116047671 (-)
PWK/PhJ	ENSLUMG00010013121	lncRNA gene	Chr7:105881084-105885024 (-)
SPRET/EiJ	ENSMSPG00010010112	lncRNA gene	Chr7:107090798-107094719 (-)
WSB/EiJ	ENSIUOG00005012216	lncRNA gene	Chr7:108217187-108221127 (-)

Homology

• Gene Tree
  Gm39078
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109478 (Evidence)
• NCBI Gene
  105243042

Representative Sequences			Length	Strain/Species
genomic	105243042	NCBI Gene Model | MGI Sequence Detail	2425	C57BL/6J
transcript	XR_869905	RefSeq | MGI Sequence Detail	1200	C57BL/6J

Other
Accession IDs

MGI:5753687

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;