Gm39075 Gene Detail

Summary

• Symbol
  Gm39075
• Name
  predicted gene, 39075
• Synonyms
  Gm45152

• Feature Type
  lncRNA gene
• IDs
  MGI:5621960
  NCBI Gene: 105243038
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:116828842-116878074 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  686 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621960	lncRNA gene	Chr7:116827853-116922902 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007258	lincRNA gene	Chr7:121002200-121054974 (+)
A/J	MGP_AJ_G0007255	lincRNA gene	Chr7:117958206-118007596 (+)
AKR/J	MGP_AKRJ_G0007225	lincRNA gene	Chr7:120961277-121011988 (+)
BALB/cJ	MGP_BALBcJ_G0007233	lincRNA gene	Chr7:117679081-117728589 (+)
C3H/HeJ	MGP_C3HHeJ_G0007177	lincRNA gene	Chr7:120878870-120929847 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007403	lincRNA gene	Chr7:125857606-125909564 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006609	lincRNA gene	Chr7:119435822-119486512 (+)
CAST/EiJ	MGP_CASTEiJ_G0007079	lincRNA gene	Chr7:112579068-112631724 (+)
CBA/J	MGP_CBAJ_G0007160	lincRNA gene	Chr7:130046756-130099776 (+)
DBA/2J	MGP_DBA2J_G0007181	lincRNA gene	Chr7:116008046-116063109 (+)
FVB/NJ	MGP_FVBNJ_G0007203	lincRNA gene	Chr7:115847476-115898912 (+)
LP/J	MGP_LPJ_G0007263	lincRNA gene	Chr7:122522940-122573090 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007180	lincRNA gene	Chr7:131628451-131678311 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007406	lincRNA gene	Chr7:119943436-119993867 (+)
PWK/PhJ	MGP_PWKPhJ_G0007021	lincRNA gene	Chr7:108882166-108935391 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006930	lincRNA gene	Chr7:106690099-106743645 (+)
WSB/EiJ	MGP_WSBEiJ_G0007140	lincRNA gene	Chr7:120818495-120871362 (+)

Homology

• Gene Tree
  Gm39075
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108303 (Evidence)
• NCBI Gene
  105243038

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108303	Ensembl Gene Model | MGI Sequence Detail	49233	C57BL/6J
transcript	ENSMUST00000206031	Ensembl | MGI Sequence Detail	512	Not Applicable

Other
Accession IDs

MGI:5753728

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;