Gm39043 Gene Detail

Summary

• Symbol
  Gm39043
• Name
  predicted gene, 39043
• Synonyms
  Gm44529

• Feature Type
  lncRNA gene
• IDs
  MGI:5621928
  NCBI Gene: 105242985
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:83463292-83487467 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  956 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621928	lncRNA gene	Chr7:83463292-83487735 (+)
129S1/SvImJ	ENSMUSG00200035636	lncRNA gene	Chr7:70274244-70297864 (+)
A/J	ENSMUSG00195044322	lncRNA gene	Chr7:74732761-74756650 (+)
AKR/J	ENSMUSG00220040978	lncRNA gene	Chr7:68250951-68274859 (+)
BALB/cJ	ENSMUSG00180039573	lncRNA gene	Chr7:71438369-71462263 (+)
C3H/HeJ	ENSMUSG00175038993	lncRNA gene	Chr7:72186276-72209896 (+)
C57BL/6NJ	ENSMUSG00215033279	lncRNA gene	Chr7:71293461-71317101 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046002	lncRNA gene	Chr7:74742578-74767016 (+)
CBA/J	ENSMUSG00210041692	lncRNA gene	Chr7:72048543-72072162 (+)
DBA/2J	ENSMUSG00185048165	lncRNA gene	Chr7:76359927-76383550 (+)
FVB/NJ	ENSMUSG00205037207	lncRNA gene	Chr7:71989134-72013030 (+)
JF1/MsJ	ENSUMUG00000019837	lncRNA gene	Chr7:81043785-81067388 (+)
LP/J	ENSMUSG00230016989	lncRNA gene	Chr7:82449359-82472967 (+)
NOD/ShiLtJ	ENSMUSG00190031672	lncRNA gene	Chr7:72195425-72219326 (+)
NZO/HlLtJ	ENSMUSG00225011549	lncRNA gene	Chr7:80723973-80747836 (+)
PWK/PhJ	ENSLUMG00010039020	lncRNA gene	Chr7:70642707-70666338 (+)
SPRET/EiJ	ENSMSPG00010013296	lncRNA gene	Chr7:71077792-71102499 (+)
WSB/EiJ	ENSIUOG00005034159	lncRNA gene	Chr7:72534117-72557966 (+)

Homology

• Gene Tree
  Gm39043
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm39043
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  3

• Ensembl
  ENSMUSG00000109450 (Evidence)
• NCBI Gene
  105242985

Representative Sequences			Length	Strain/Species
genomic	105242985	NCBI Gene Model | MGI Sequence Detail	24176	C57BL/6J
transcript	XR_869761	RefSeq | MGI Sequence Detail	2322	C57BL/6J

Other
Accession IDs

MGI:5753105

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55