Gm39041 Gene Detail

Summary

• Symbol
  Gm39041
• Name
  predicted gene, 39041
• Synonyms
  Gm44557

• Feature Type
  lncRNA gene
• IDs
  MGI:5621926
  NCBI Gene: 105242981
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:78948773-78952674 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621926	lncRNA gene	Chr7:78946962-78952674 (+)
129S1/SvImJ	ENSMUSG00200034887	unclassified gene	Chr7:65766976-65770866 (+)
A/J	ENSMUSG00195014254	unclassified gene	Chr7:70182941-70186842 (+)
AKR/J	ENSMUSG00220040359	unclassified gene	Chr7:63724962-63728863 (+)
BALB/cJ	ENSMUSG00180013736	unclassified gene	Chr7:66908067-66911968 (+)
C3H/HeJ	ENSMUSG00175022124	unclassified gene	Chr7:67679057-67682947 (+)
C57BL/6NJ	ENSMUSG00215029460	unclassified gene	Chr7:66773560-66777461 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001922	unclassified gene	Chr7:81852700-81856600 (+)
CAST/EiJ	ENSTCUG00005004362	unclassified gene	Chr7:70230210-70234075 (+)
CBA/J	ENSMUSG00210023991	unclassified gene	Chr7:67530346-67534236 (+)
DBA/2J	ENSMUSG00185046993	unclassified gene	Chr7:71853064-71856954 (+)
FVB/NJ	ENSMUSG00205027215	unclassified gene	Chr7:67419938-67423839 (+)
JF1/MsJ	ENSUMUG00000034481	unclassified gene	Chr7:76512778-76516646 (+)
LP/J	ENSMUSG00230015916	unclassified gene	Chr7:77943771-77947672 (+)
NOD/ShiLtJ	ENSMUSG00190019483	unclassified gene	Chr7:67672694-67676595 (+)
NZO/HlLtJ	ENSMUSG00225043146	unclassified gene	Chr7:76184673-76188563 (+)
PWK/PhJ	ENSLUMG00010018028	unclassified gene	Chr7:66103206-66107096 (+)
SPRET/EiJ	ENSMSPG00010024353	unclassified gene	Chr7:66520147-66524050 (+)
WSB/EiJ	ENSIUOG00005022820	unclassified gene	Chr7:68022050-68025957 (+)

Homology

• Gene Tree
  Gm39041
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm39041
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000108460 (Evidence)
• NCBI Gene
  105242981

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108460	Ensembl Gene Model | MGI Sequence Detail	3902	C57BL/6J
transcript	AK051494	GenBank | ENA | DDBJ | MGI Sequence Detail	3902	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5753133

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55

TSS for Gm39041:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67334	Chr7:78946763-78946796 (+)	-1,993 bp
Tssr67335	Chr7:78946853-78946887 (+)	-1,903 bp
Tssr67336	Chr7:78949584-78949611 (+)	825 bp