Gm38948 Gene Detail

Summary

• Symbol
  Gm38948
• Name
  predicted gene, 38948
• Synonyms
  Gm45281

• Feature Type
  lncRNA gene
• IDs
  MGI:5621833
  NCBI Gene: 105242854
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:15714247-15720549 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621833	lncRNA gene	Chr7:15705808-15720549 (+)
129S1/SvImJ	ENSMUSG00200042004	lncRNA gene	Chr7:9080172-9092946 (+)
A/J	ENSMUSG00195052576	lncRNA gene	Chr7:9541563-9554336 (+)
AKR/J	ENSMUSG00220030115	lncRNA gene	Chr7:7825060-7846567 (+)
BALB/cJ	ENSMUSG00180051087	lncRNA gene	Chr7:9457357-9470130 (+)
C3H/HeJ	ENSMUSG00175050527	lncRNA gene	Chr7:9944858-9957631 (+)
C57BL/6NJ	ENSMUSG00215044668	lncRNA gene	Chr7:9204456-9217231 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029466	lncRNA gene	Chr7:9950508-9963195 (+)
CBA/J	ENSMUSG00210049525	lncRNA gene	Chr7:9172246-9185018 (+)
DBA/2J	ENSMUSG00185055506	lncRNA gene	Chr7:12686713-12699485 (+)
FVB/NJ	ENSMUSG00205048959	lncRNA gene	Chr7:9578829-9591604 (+)
JF1/MsJ	ENSUMUG00000044525	lncRNA gene	Chr7:15947903-15960676 (+)
LP/J	ENSMUSG00230047293	lncRNA gene	Chr7:16904608-16917380 (+)
NOD/ShiLtJ	ENSMUSG00190051533	lncRNA gene	Chr7:6006295-6019016 (+)
NZO/HlLtJ	ENSMUSG00225054531	lncRNA gene	Chr7:14139332-14152106 (+)
PWK/PhJ	ENSLUMG00010051356	lncRNA gene	Chr7:12262953-12275718 (+)
SPRET/EiJ	ENSMSPG00010048687	lncRNA gene	Chr7:8722419-8735231 (+)
WSB/EiJ	ENSIUOG00005053715	lncRNA gene	Chr7:16519617-16532369 (-)

Homology

• Gene Tree
  Gm38948
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000109984 (Evidence)
• NCBI Gene
  105242854

Representative Sequences			Length	Strain/Species
genomic	105242854	NCBI Gene Model | MGI Sequence Detail	6303	C57BL/6J
transcript	XR_003946607	RefSeq | MGI Sequence Detail	4782	C57BL/6J

Other
Accession IDs

MGI:5791117

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;