Gm38941 Pseudogene Detail

Summary

• Symbol
  Gm38941
• Name
  predicted gene, 38941

• Feature Type
  pseudogene
• IDs
  MGI:5621826
  NCBI Gene: 105242844
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:5057471-5057999 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621826	pseudogene	Chr7:5057471-5057999 (+)
129S1/SvImJ	ENSMUSG00200042314	pseudogene	Chr7:1788504-1789032 (+)
A/J	ENSMUSG00195052722	pseudogene	Chr7:1779336-1779864 (+)
AKR/J	ENSMUSG00220027093	pseudogene	Chr7:2315368-2315896 (-)
BALB/cJ	ENSMUSG00180051779	pseudogene	Chr7:1734546-1735074 (+)
C3H/HeJ	ENSMUSG00175048151	pseudogene	Chr7:1742234-1742762 (+)
C57BL/6NJ	ENSMUSG00215046288	pseudogene	Chr7:1780299-1780827 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028686	pseudogene	Chr7:1952067-1952595 (+)
CBA/J	ENSMUSG00210047412	pseudogene	Chr7:1740689-1741217 (+)
DBA/2J	ENSMUSG00185043993	pseudogene	Chr7:1923142-1923670 (+)
FVB/NJ	ENSMUSG00205049413	pseudogene	Chr7:1721311-1721839 (+)
JF1/MsJ	ENSUMUG00000051480	pseudogene	Chr7:1988475-1989003 (+)
LP/J	ENSMUSG00230040891	pseudogene	Chr7:4933956-4934484 (+)
NOD/ShiLtJ	ENSMUSG00190049788	pseudogene	Chr7:1813125-1813653 (+)
NZO/HlLtJ	ENSMUSG00225021082	pseudogene	Chr7:2845988-2846516 (+)
NZO/HlLtJ	ENSMUSG00225022714	pseudogene	Chr7:2848170-2848698 (+)
PWK/PhJ	ENSLUMG00010049313	pseudogene	Chr7:5500910-5501438 (+)
SPRET/EiJ	ENSMSPG00010048769	pseudogene	Chr7:1911461-1911977 (+)
WSB/EiJ	ENSIUOG00005052365	pseudogene	Chr7:1740969-1741497 (+)

Homology

• Gene Tree
  Gm38941
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000109549 (Evidence)
• NCBI Gene
  105242844

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109549	Ensembl Gene Model | MGI Sequence Detail	529	C57BL/6J
transcript	ENSMUST00000208606	Ensembl | MGI Sequence Detail	529	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;