Gm38883 Gene Detail

Summary

• Symbol
  Gm38883
• Name
  predicted gene, 38883

• Feature Type
  lncRNA gene
• IDs
  MGI:5621768
  NCBI Gene: 105242751
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:117855763-117857977 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621768	lncRNA gene	Chr6:117847540-117868617 (-)
129S1/SvImJ	ENSMUSG00200052035	lncRNA gene	Chr6:115063530-115064234 (-)
A/J	ENSMUSG00195047866	lncRNA gene	Chr6:114463715-114464419 (-)
AKR/J	ENSMUSG00220034764	lncRNA gene	Chr6:113349587-113350291 (-)
BALB/cJ	ENSMUSG00180049705	lncRNA gene	Chr6:114831433-114832137 (-)
C3H/HeJ	ENSMUSG00175035075	lncRNA gene	Chr6:62637940-62638644 (+)
C57BL/6NJ	ENSMUSG00215048599	lncRNA gene	Chr6:114821595-114822299 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050834	lncRNA gene	Chr6:114620804-114621508 (-)
CBA/J	ENSMUSG00210047794	lncRNA gene	Chr6:114598727-114599431 (-)
DBA/2J	ENSMUSG00185049834	lncRNA gene	Chr6:115257011-115257715 (-)
FVB/NJ	ENSMUSG00205051754	lncRNA gene	Chr6:113714612-113715316 (-)
JF1/MsJ	ENSUMUG00000054832	lncRNA gene	Chr6:113854683-113855387 (-)
LP/J	ENSMUSG00230049380	lncRNA gene	Chr6:116461084-116461788 (-)
NOD/ShiLtJ	ENSMUSG00190050467	lncRNA gene	Chr6:114211007-114211711 (-)
NZO/HlLtJ	ENSMUSG00225047824	lncRNA gene	Chr6:118316906-118317610 (-)
PWK/PhJ	ENSLUMG00010050043	lncRNA gene	Chr6:113213674-113214378 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005046789	lncRNA gene	Chr6:114889062-114889766 (-)

Homology

• Gene Tree
  Gm38883
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  14
• Gene trapped
  14
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000121125 (Evidence)
• NCBI Gene
  105242751

Representative Sequences			Length	Strain/Species
genomic	105242751	NCBI Gene Model | MGI Sequence Detail	2215	C57BL/6J
transcript	XR_869397	RefSeq | MGI Sequence Detail	2129	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm38883:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62637	Chr6:117856473-117856489 (-)	1,496 bp