Gm38882 Gene Detail

Summary

• Symbol
  Gm38882
• Name
  predicted gene, 38882

• Feature Type
  lncRNA gene
• IDs
  MGI:5621767
  NCBI Gene: 105242750
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:117856594-117861556 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  242 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621767	lncRNA gene	Chr6:117856197-117866831 (+)
129S1/SvImJ	ENSMUSG00200052040	lncRNA gene	Chr6:115064728-115069325 (+)
A/J	ENSMUSG00195047874	lncRNA gene	Chr6:114464913-114469512 (+)
AKR/J	ENSMUSG00220034784	lncRNA gene	Chr6:113350785-113355380 (+)
BALB/cJ	ENSMUSG00180049714	lncRNA gene	Chr6:114832631-114837228 (+)
C3H/HeJ	ENSMUSG00175035091	lncRNA gene	Chr6:62632849-62637446 (-)
C57BL/6NJ	ENSMUSG00215048606	lncRNA gene	Chr6:114822793-114827391 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050846	lncRNA gene	Chr6:114622002-114626648 (+)
CBA/J	ENSMUSG00210047802	lncRNA gene	Chr6:114599925-114604522 (+)
DBA/2J	ENSMUSG00185049848	lncRNA gene	Chr6:115258209-115262804 (+)
FVB/NJ	ENSMUSG00205051765	lncRNA gene	Chr6:113715810-113720430 (+)
JF1/MsJ	ENSUMUG00000054838	lncRNA gene	Chr6:113855881-113860489 (+)
LP/J	ENSMUSG00230049266	lncRNA gene	Chr6:116462282-116466877 (+)
NOD/ShiLtJ	ENSMUSG00190050478	lncRNA gene	Chr6:114212205-114216800 (+)
NZO/HlLtJ	ENSMUSG00225047658	lncRNA gene	Chr6:118318104-118322700 (+)
PWK/PhJ	ENSLUMG00010050051	lncRNA gene	Chr6:113214872-113219481 (+)
SPRET/EiJ	ENSMSPG00010047199	lncRNA gene	Chr6:116064606-116069232 (+)
WSB/EiJ	ENSIUOG00005046804	lncRNA gene	Chr6:114890260-114894846 (+)

Homology

• Gene Tree
  Gm38882
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  109
• Gene trapped
  109
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000120675 (Evidence)
• NCBI Gene
  105242750

Representative Sequences			Length	Strain/Species
genomic	105242750	NCBI Gene Model | MGI Sequence Detail	4963	C57BL/6J
transcript	NR_168029	RefSeq | MGI Sequence Detail	1141	ZRU/MplStud

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm38882:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58451	Chr6:117856924-117856943 (+)	340 bp
Tssr58452	Chr6:117856958-117857007 (+)	389 bp