Gm38875 Gene Detail

Summary

• Symbol
  Gm38875
• Name
  predicted gene, 38875

• Feature Type
  lncRNA gene
• IDs
  MGI:5621760
  NCBI Gene: 105242741
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:114333209-114374814 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1342 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621760	lncRNA gene	Chr6:114333151-114374814 (-)
129S1/SvImJ	ENSMUSG00200025938	lncRNA gene	Chr6:111381842-111423874 (-)
A/J	ENSMUSG00195018089	lncRNA gene	Chr6:111055672-111097208 (-)
AKR/J	ENSMUSG00220036685	lncRNA gene	Chr6:109986777-110028311 (-)
BALB/cJ	ENSMUSG00180002519	lncRNA gene	Chr6:111420388-111461929 (-)
C3H/HeJ	ENSMUSG00175035893	lncRNA gene	Chr6:65938830-65980360 (+)
C57BL/6NJ	ENSMUSG00215023509	lncRNA gene	Chr6:111414795-111456330 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030421	lncRNA gene	Chr6:111223846-111265963 (-)
CBA/J	ENSMUSG00210020675	lncRNA gene	Chr6:111246614-111288142 (-)
DBA/2J	ENSMUSG00185049640	lncRNA gene	Chr6:111617786-111659810 (-)
FVB/NJ	ENSMUSG00205028318	lncRNA gene	Chr6:110314811-110357172 (-)
JF1/MsJ	ENSUMUG00000031796	lncRNA gene	Chr6:110347539-110389573 (-)
LP/J	ENSMUSG00230049078	lncRNA gene	Chr6:112883125-112925144 (-)
NOD/ShiLtJ	ENSMUSG00190018470	lncRNA gene	Chr6:110819373-110861388 (-)
NZO/HlLtJ	ENSMUSG00225048192	lncRNA gene	Chr6:114831974-114873994 (-)
PWK/PhJ	ENSLUMG00010028431	lncRNA gene	Chr6:109841556-109883586 (-)
SPRET/EiJ	ENSMSPG00010046124	lncRNA gene	Chr6:112611302-112658829 (-)
WSB/EiJ	ENSIUOG00005026081	lncRNA gene	Chr6:111567492-111609812 (-)

Homology

• Gene Tree
  Gm38875
  

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000120498 (Evidence)
• NCBI Gene
  105242741

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120498	Ensembl Gene Model | MGI Sequence Detail	41606	C57BL/6J
transcript	ENSMUST00000327344	Ensembl | MGI Sequence Detail	563	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm38875:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62486	Chr6:114374716-114374738 (-)	87 bp