Gm38825 Gene Detail

Summary

• Symbol
  Gm38825
• Name
  predicted gene, 38825
• Synonyms
  Gm44051

• Feature Type
  lncRNA gene
• IDs
  MGI:5621710
  NCBI Gene: 105242674
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:67155665-67163676 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  340 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621710	lncRNA gene	Chr6:67020686-67216694 (-)
129S1/SvImJ	ENSMUSG00200013782	lncRNA gene	Chr6:64016428-64130477 (-)
A/J	ENSMUSG00195045774	lncRNA gene	Chr6:63760932-63874979 (-)
AKR/J	ENSMUSG00220045659	lncRNA gene	Chr6:63252182-63366198 (-)
BALB/cJ	ENSMUSG00180042828	lncRNA gene	Chr6:64116819-64230863 (-)
C3H/HeJ	ENSMUSG00175049818	lncRNA gene	Chr6:113220318-113334346 (+)
C57BL/6NJ	ENSMUSG00215043552	lncRNA gene	Chr6:64089805-64203839 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003871	antisense lncRNA gene	Chr6:61437902-61438744 (-)
CAST/EiJ	ENSTCUG00005037922	lncRNA gene	Chr6:64390068-64448832 (-)
CBA/J	ENSMUSG00210046242	lncRNA gene	Chr6:63906462-64020492 (-)
DBA/2J	ENSMUSG00185047425	lncRNA gene	Chr6:64477532-64591593 (-)
FVB/NJ	ENSMUSG00205040972	lncRNA gene	Chr6:63904484-64018538 (-)
JF1/MsJ	ENSUMUG00000037993	lncRNA gene	Chr6:63826803-63885352 (-)
LP/J	ENSMUSG00230026207	lncRNA gene	Chr6:65600096-65714130 (-)
NOD/ShiLtJ	ENSMUSG00190040420	lncRNA gene	Chr6:63768386-63826936 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010024804	lncRNA gene	Chr6:63041834-63100318 (-)
SPRET/EiJ	ENSMSPG00010029883	lncRNA gene	Chr6:64890086-64949336 (-)
WSB/EiJ	ENSIUOG00005023244	lncRNA gene	Chr6:64559602-64619645 (-)

Homology

• Gene Tree
  Gm38825
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000107799 (Evidence)
• NCBI Gene
  105242674

Representative Sequences			Length	Strain/Species
genomic	105242674	NCBI Gene Model | MGI Sequence Detail	8012	C57BL/6J
transcript	XR_003956448	RefSeq | MGI Sequence Detail	3996	C57BL/6J

Other
Accession IDs

MGI:5690443

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm38825:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61238	Chr6:67163630-67163660 (-)	31 bp
Tssr61237	Chr6:67163552-67163585 (-)	107 bp