Gm38642 Gene Detail

Summary

• Symbol
  Gm38642
• Name
  predicted gene, 38642

• Feature Type
  lncRNA gene
• IDs
  MGI:5621527
  NCBI Gene: 102642880
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:120043650-120086112 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1583 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621527	lncRNA gene	Chr9:120008104-120109393 (+)
129S1/SvImJ	ENSMUSG00200032133	lncRNA gene	Chr9:117143144-117230332 (+)
A/J	ENSMUSG00195028520	lncRNA gene	Chr9:116324926-116405662 (+)
AKR/J	ENSMUSG00220020267	lncRNA gene	Chr9:116780301-116860984 (+)
BALB/cJ	ENSMUSG00180029487	lncRNA gene	Chr9:116862207-116942955 (+)
C3H/HeJ	ENSMUSG00175019204	lncRNA gene	Chr9:117105517-117186252 (+)
C57BL/6NJ	ENSMUSG00215033017	lncRNA gene	Chr9:116974431-117061626 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017519	lncRNA gene	Chr9:116732079-116813210 (+)
CBA/J	ENSMUSG00210042820	lncRNA gene	Chr9:116819130-116899809 (+)
DBA/2J	ENSMUSG00185017763	lncRNA gene	Chr9:117153371-117234047 (+)
FVB/NJ	ENSMUSG00205031827	lncRNA gene	Chr9:116993705-117074446 (+)
JF1/MsJ	ENSUMUG00000050968	lncRNA gene	Chr9:117011835-117092874 (+)
LP/J	ENSMUSG00230038404	lncRNA gene	Chr9:117271464-117358658 (+)
NOD/ShiLtJ	ENSMUSG00190015216	lncRNA gene	Chr9:116752847-116840032 (+)
NZO/HlLtJ	ENSMUSG00225023934	lncRNA gene	Chr9:117536034-117623213 (+)
PWK/PhJ	ENSLUMG00010037933	lncRNA gene	Chr9:116902387-116983116 (+)
SPRET/EiJ	ENSMSPG00010024202	lncRNA gene	Chr9:118603065-118683497 (+)
WSB/EiJ	ENSIUOG00005021793	lncRNA gene	Chr9:116207921-116288664 (+)

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000111219 (Evidence), ENSMUSG00000111360 (Evidence)
• NCBI Gene
  102642880

Representative Sequences			Length	Strain/Species
genomic	102642880	NCBI Gene Model | MGI Sequence Detail	42463	C57BL/6J
transcript	XR_871360	RefSeq | MGI Sequence Detail	575	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;