Gm38632 Gene Detail

Summary

• Symbol
  Gm38632
• Name
  predicted gene, 38632

• Feature Type
  lncRNA gene
• IDs
  MGI:5621517
  NCBI Gene: 102642778
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:119862920-119890568 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  856 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621517	lncRNA gene	Chr4:119862739-119890590 (-)
129S1/SvImJ	ENSMUSG00200014786	lncRNA gene	Chr4:113762217-113790886 (-)
A/J	ENSMUSG00195033597	lncRNA gene	Chr4:115003723-115030349 (-)
AKR/J	ENSMUSG00220022649	lncRNA gene	Chr4:114375614-114402242 (-)
BALB/cJ	ENSMUSG00180047529	lncRNA gene	Chr4:113067111-113093771 (-)
C3H/HeJ	ENSMUSG00175025450	lncRNA gene	Chr4:114080227-114106901 (-)
C57BL/6NJ	ENSMUSG00215039895	lncRNA gene	Chr4:115201999-115228634 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046128	lncRNA gene	Chr4:113879024-113905632 (-)
CBA/J	ENSMUSG00210052825	lncRNA gene	Chr4:113686703-113713379 (-)
DBA/2J	ENSMUSG00185047642	lncRNA gene	Chr4:115238650-115265294 (-)
FVB/NJ	ENSMUSG00205030886	lncRNA gene	Chr4:113157549-113184339 (-)
JF1/MsJ	ENSUMUG00000028257	lncRNA gene	Chr4:115141262-115175118 (-)
LP/J	ENSMUSG00230046781	lncRNA gene	Chr4:118579951-118608610 (-)
NOD/ShiLtJ	ENSMUSG00190047279	lncRNA gene	Chr4:113080104-113106771 (-)
NZO/HlLtJ	ENSMUSG00225017235	lncRNA gene	Chr4:124133001-124159626 (-)
PWK/PhJ	ENSLUMG00010047844	lncRNA gene	Chr4:112564557-112591251 (-)
SPRET/EiJ	ENSMSPG00010041671	lncRNA gene	Chr4:114641503-114668091 (-)
WSB/EiJ	ENSIUOG00005048991	lncRNA gene	Chr4:113373410-113400188 (-)

Homology

• Gene Tree
  Gm38632
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm38632
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000120931 (Evidence)
• NCBI Gene
  102642778

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120931	Ensembl Gene Model | MGI Sequence Detail	27649	C57BL/6J
transcript	ENSMUST00000246544	Ensembl | MGI Sequence Detail	2089	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm38632:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43145	Chr4:119890567-119890573 (-)	-2 bp
Tssr43144	Chr4:119889563-119889583 (-)	995 bp