Gm38619 Gene Detail

Summary

• Symbol
  Gm38619
• Name
  predicted gene, 38619

• Feature Type
  lncRNA gene
• IDs
  MGI:5621504
  NCBI Gene: 102642616
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:12522238-12529459 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  296 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621504	lncRNA gene	Chr16:12522232-12530015 (+)
129S1/SvImJ	ENSMUSG00200012257	lncRNA gene	Chr16:9507408-9509780 (+)
A/J	ENSMUSG00195011780	lncRNA gene	Chr16:9066694-9069066 (+)
AKR/J	ENSMUSG00220017585	lncRNA gene	Chr16:9363504-9365876 (+)
BALB/cJ	ENSMUSG00180008998	lncRNA gene	Chr16:9305608-9307989 (+)
C3H/HeJ	ENSMUSG00175030707	lncRNA gene	Chr16:9472592-9474964 (+)
C57BL/6NJ	ENSMUSG00215023439	lncRNA gene	Chr16:9183670-9186044 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032943	lncRNA gene	Chr16:9389153-9391540 (+)
CBA/J	ENSMUSG00210012270	lncRNA gene	Chr16:9489593-9491965 (+)
DBA/2J	ENSMUSG00185010719	lncRNA gene	Chr16:9435110-9437482 (+)
FVB/NJ	ENSMUSG00205014336	lncRNA gene	Chr16:9423373-9425745 (+)
JF1/MsJ	ENSUMUG00000039801	lncRNA gene	Chr16:9543227-9545599 (+)
LP/J	ENSMUSG00230046394	lncRNA gene	Chr16:12003045-12005416 (+)
NOD/ShiLtJ	ENSMUSG00190028358	lncRNA gene	Chr16:9558475-9560849 (+)
NZO/HlLtJ	ENSMUSG00225032357	lncRNA gene	Chr16:15242364-15244736 (+)
PWK/PhJ	ENSLUMG00010018103	lncRNA gene	Chr16:9404167-9406524 (+)
SPRET/EiJ	ENSMSPG00010017960	lncRNA gene	Chr16:9404339-9406712 (+)
WSB/EiJ	ENSIUOG00005017043	lncRNA gene	Chr16:9512004-9514382 (+)

Homology

• Gene Tree
  Gm38619
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000116197 (Evidence)
• NCBI Gene
  102642616

Representative Sequences			Length	Strain/Species
genomic	102642616	NCBI Gene Model | MGI Sequence Detail	7222	C57BL/6J
transcript	XR_875918	RefSeq | MGI Sequence Detail	712	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm38619:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137118	Chr16:12522263-12522280 (+)	34 bp