Gm38593 Gene Detail

Summary

• Symbol
  Gm38593
• Name
  predicted gene, 38593

• Feature Type
  lncRNA gene
• IDs
  MGI:5621478
  NCBI Gene: 102642041
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:69136665-69144221 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  269 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621478	lncRNA gene	Chr17:69136665-69144256 (-)
129S1/SvImJ	ENSMUSG00200039429	lncRNA gene	Chr17:64482894-64490286 (-)
A/J	ENSMUSG00195018290	lncRNA gene	Chr17:65823803-65831172 (-)
AKR/J	ENSMUSG00220018908	lncRNA gene	Chr17:64896581-64903951 (-)
BALB/cJ	ENSMUSG00180021772	lncRNA gene	Chr17:65561156-65568523 (-)
C3H/HeJ	ENSMUSG00175031826	lncRNA gene	Chr17:64875989-64883378 (-)
C57BL/6NJ	ENSMUSG00215032781	lncRNA gene	Chr17:64528313-64535699 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026718	lncRNA gene	Chr17:65450976-65458379 (-)
CBA/J	ENSMUSG00210030805	lncRNA gene	Chr17:64675788-64683174 (-)
DBA/2J	ENSMUSG00185023059	lncRNA gene	Chr17:67519634-67527023 (-)
FVB/NJ	ENSMUSG00205018923	lncRNA gene	Chr17:65302535-65309924 (-)
JF1/MsJ	ENSUMUG00000040247	lncRNA gene	Chr17:67185813-67193250 (-)
LP/J	ENSMUSG00230017294	lncRNA gene	Chr17:68501039-68508431 (-)
NOD/ShiLtJ	ENSMUSG00190040418	lncRNA gene	Chr17:64658292-64665661 (-)
NZO/HlLtJ	ENSMUSG00225029067	lncRNA gene	Chr17:70778639-70786008 (-)
PWK/PhJ	ENSLUMG00010030033	lncRNA gene	Chr17:64454666-64462097 (-)
SPRET/EiJ	ENSMSPG00010018401	lncRNA gene	Chr17:64820920-64828840 (-)
WSB/EiJ	ENSIUOG00005033149	lncRNA gene	Chr17:65537662-65545063 (-)

Homology

• Gene Tree
  Gm38593
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000117004 (Evidence)
• NCBI Gene
  102642041

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117004	Ensembl Gene Model | MGI Sequence Detail	7557	C57BL/6J
transcript	ENSMUST00000274017	Ensembl | MGI Sequence Detail	861	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;