Gm38590 Gene Detail

Summary

• Symbol
  Gm38590
• Name
  predicted gene, 38590
• Synonyms
  Gm45578

• Feature Type
  lncRNA gene
• IDs
  MGI:5621475
  NCBI Gene: 102641995
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:82917254-82933991 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  657 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621475	lncRNA gene	Chr8:82911428-82934164 (-)
129S1/SvImJ	ENSMUSG00200026129	lncRNA gene	Chr8:77301126-77325234 (-)
A/J	ENSMUSG00195018690	lncRNA gene	Chr8:77648471-77672588 (-)
AKR/J	ENSMUSG00220024362	lncRNA gene	Chr8:77697878-77721987 (-)
BALB/cJ	ENSMUSG00180022163	lncRNA gene	Chr8:77499681-77523785 (-)
C3H/HeJ	ENSMUSG00175011678	lncRNA gene	Chr8:77579768-77603877 (-)
C57BL/6NJ	ENSMUSG00215022860	lncRNA gene	Chr8:77204807-77227545 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036964	lncRNA gene	Chr8:77097605-77120318 (-)
CBA/J	ENSMUSG00210020777	lncRNA gene	Chr8:77571882-77595991 (-)
DBA/2J	ENSMUSG00185038121	lncRNA gene	Chr8:83681093-83705205 (-)
FVB/NJ	ENSMUSG00205043194	lncRNA gene	Chr8:76610902-76633635 (-)
JF1/MsJ	ENSUMUG00000038588	lncRNA gene	Chr8:85966665-85989434 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190029977	lncRNA gene	Chr8:77636723-77660828 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010030557	lncRNA gene	Chr8:77345212-77367925 (-)
SPRET/EiJ	ENSMSPG00010024672	lncRNA gene	Chr8:79189704-79220569 (-)
WSB/EiJ	ENSIUOG00005016578	lncRNA gene	Chr8:78388710-78412813 (-)

Homology

• Gene Tree
  Gm38590
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38590
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000110045 (Evidence)
• NCBI Gene
  102641995

Representative Sequences			Length	Strain/Species
genomic	102641995	NCBI Gene Model | MGI Sequence Detail	16738	C57BL/6J
transcript	XR_878977	RefSeq | MGI Sequence Detail	765	C57BL/6J

Other
Accession IDs

MGI:5791414

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm38590:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81939	Chr8:82934002-82934012 (-)	-16 bp