Gm38577 Gene Detail

Summary

• Symbol
  Gm38577
• Name
  predicted gene, 38577

• Feature Type
  lncRNA gene
• IDs
  MGI:5621462
  NCBI Gene: 102641825
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:82272981-82278192 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621462	lncRNA gene	Chr11:82272947-82278192 (-)
129S1/SvImJ	ENSMUSG00200051545	lncRNA gene	Chr11:79396450-79400996 (-)
A/J	ENSMUSG00195046812	lncRNA gene	Chr11:79262475-79267022 (-)
AKR/J	ENSMUSG00220049256	lncRNA gene	Chr11:79492997-79497554 (-)
BALB/cJ	ENSMUSG00180042495	lncRNA gene	Chr11:79462203-79466753 (-)
C3H/HeJ	ENSMUSG00175041800	lncRNA gene	Chr11:79432863-79437407 (-)
C57BL/6NJ	ENSMUSG00215041961	lncRNA gene	Chr11:79057508-79062056 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046031	lncRNA gene	Chr11:78964983-78969519 (-)
CBA/J	ENSMUSG00210046561	lncRNA gene	Chr11:79250599-79255145 (-)
DBA/2J	ENSMUSG00185041045	lncRNA gene	Chr11:79517013-79521552 (-)
FVB/NJ	ENSMUSG00205046776	lncRNA gene	Chr11:79337962-79342505 (-)
JF1/MsJ	ENSUMUG00000054406	lncRNA gene	Chr11:79910034-79914601 (-)
LP/J	ENSMUSG00230049885	lncRNA gene	Chr11:80551919-80556466 (-)
NOD/ShiLtJ	ENSMUSG00190048149	lncRNA gene	Chr11:79573899-79578445 (-)
NZO/HlLtJ	ENSMUSG00225039571	lncRNA gene	Chr11:82722329-82726872 (-)
PWK/PhJ	ENSLUMG00010025303	lncRNA gene	Chr11:79432144-79436679 (-)
SPRET/EiJ	ENSMSPG00010045117	lncRNA gene	Chr11:79853196-79857793 (-)
WSB/EiJ	ENSIUOG00005037269	lncRNA gene	Chr11:79404624-79409173 (-)

Homology

• Gene Tree
  Gm38577
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm38577
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000113710 (Evidence)
• NCBI Gene
  102641825

Representative Sequences			Length	Strain/Species
genomic	102641825	NCBI Gene Model | MGI Sequence Detail	5212	C57BL/6J
transcript	AK044628	GenBank | ENA | DDBJ | MGI Sequence Detail	4547	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6